>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS)
          Length = 1264

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 270  ASGYKKKAPPSVQEEDMRKLPAFFEQLRVIGEA 172
            ASGY  K P  VQE D  KL     +LR + EA
Sbjct: 1224 ASGYSAKVPLEVQEADEVKLQQTEAELRKVDEA 1256

>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS) (Protein G7a)
          Length = 1264

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 270  ASGYKKKAPPSVQEEDMRKLPAFFEQLRVIGEA 172
            ASGY  K P  VQE D  KL     +LR + EA
Sbjct: 1224 ASGYPVKVPLEVQEADEAKLQQTEAELRKVDEA 1256

>ZIC1_MOUSE (P46684) Zinc finger protein ZIC 1 (Zinc finger protein of the|
           cerebellum 1)
          Length = 447

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 44  MGHHHHPQKKGQYQLPNKNASRS---Q*KQRADSKALPDYAFSFFSAS 178
           +GHHHHP   G Y     N++R    + +   D+ A      S F+AS
Sbjct: 77  LGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAAS 124

>ZIC1_HUMAN (Q15915) Zinc finger protein ZIC 1 (Zinc finger protein of the|
           cerebellum 1)
          Length = 447

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 44  MGHHHHPQKKGQYQLPNKNASRS---Q*KQRADSKALPDYAFSFFSAS 178
           +GHHHHP   G Y     N++R    + +   D+ A      S F+AS
Sbjct: 77  LGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAAS 124

>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 47  GHHHHPQKKGQYQLPNKNASRSQ*KQRADSKALPDYAFSFF 169
           GHHHH  + G+YQ  +  A  +  K+R D + + ++    F
Sbjct: 139 GHHHH-HEHGEYQDAHARAHANDIKRRFDGREVTNWQILLF 178

>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 47  GHHHHPQKKGQYQLPNKNASRSQ*KQRADSKALPDYAFSFF 169
           GHHHH  + G+YQ  +  A  +  K+R D + + ++    F
Sbjct: 139 GHHHH-HEHGEYQDAHARAHANDIKRRFDGREVTNWQILLF 178

>YGGD_ECOLI (P11663) Hypothetical protein yggD|
          Length = 169

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 107 YWHFCLEVDTAPFFADGGDVPFIENSN 27
           +WH+  E D  P FAD     FI N N
Sbjct: 94  FWHYLNEQDETPGFADDMTWDFISNVN 120

>KCNA4_MOUSE (Q61423) Potassium voltage-gated channel subfamily A member 4|
           (Voltage-gated potassium channel subunit Kv1.4)
          Length = 654

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 47  GHHHHPQKKGQYQL---PNKNASRSQ*KQRADSKALPDYAFSFFSASPMTRSCSKK 205
           G HHH Q +G Y          SR + +QR + K L     SF   S +  S S++
Sbjct: 60  GPHHHHQTRGAYSSHDPQGSRGSRRRRRQRTEKKKLHHRQSSFPHCSDLMPSGSEE 115

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 53  HHHPQKKGQYQLPNKNASRSQ*KQRADSKALPDYAFSFFSASPMTRSCSKKAGS 214
           HH PQ++ Q Q   + + + Q +Q+  S     +  S  SA  +T S S   GS
Sbjct: 753 HHQPQQQQQQQ--QQQSQQQQQQQQQQSLGQQQHCLSSPSAGSLTPSSSSGGGS 804

>GSP_CRIFA (P90518) Glutathionylspermidine synthase (EC 6.3.1.8)|
          Length = 719

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 147 GSAFESALCFYWDLLAFLFGS*YCPFFCGW 58
           G  F+S L +   L    F   Y P FCGW
Sbjct: 643 GKFFDSVLVYQQRLFLKKFDGKYFPIFCGW 672

>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
            (ValRS) (Protein G7a)
          Length = 1263

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 270  ASGYKKKAPPSVQEEDMRKLPAFFEQLRVIGEA 172
            AS Y  K P  VQE D  KL     +LR + EA
Sbjct: 1223 ASSYSAKVPLEVQEADEAKLQQTEAELRKVDEA 1255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,987,306
Number of Sequences: 219361
Number of extensions: 761860
Number of successful extensions: 2682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2670
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)