>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 163 tttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggggagcttcctcat 222
           |||||||||||| |||| |||||||   |||||||| || || |||| ||||||||||||
Sbjct: 796 tttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttcctcat 737

                    
Query: 223 gtcctcctc 231
           |||||||||
Sbjct: 736 gtcctcctc 728

>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 163 tttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggggagcttcctcat 222
           |||||||||||| |||| |||||||   ||||| || || || ||||||||||| |||||
Sbjct: 948 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagctttctcat 889

                    
Query: 223 gtcctcctc 231
           |||||||||
Sbjct: 888 gtcctcctc 880

>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 218  ctcatgtcctcctcttggacactggggggagccttctttttgtaaccggacgcttcc 274
            |||||||||||||| |||||| |  | |||||||||| ||||||||| || ||||||
Sbjct: 3083 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttcc 3027

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 218      ctcatgtcctcctcttggacactggggggagccttctttttgtaaccggacgcttcc 274
                |||||||||||||| |||||| |  | |||||||||| ||||||||| || ||||||
Sbjct: 27542733 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttcc 27542677

>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 218   ctcatgtcctcctcttggacactggggggagccttctttttgtaaccggacgcttcc 274
             |||||||||||||| |||||| |  | |||||||||| ||||||||| || ||||||
Sbjct: 20041 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttcc 20097

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 218      ctcatgtcctcctcttggacactggggggagccttctttttgtaaccggacgcttcc 274
                |||||||||||||| |||||| |  | |||||||||| ||||||||| || ||||||
Sbjct: 27634056 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttcc 27634000

>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                     
Query: 218  ctcatgtcctcctcttggacactggggggagccttctttttgtaaccggacgcttcc 274
            |||||||||||||| |||||| |  | |||||||||| ||||||||| || ||||||
Sbjct: 7781 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttcc 7837

>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 218  ctcatgtcctcctcttggacactggggggagccttctttttgtaaccggacgcttcc 274
            |||||||||||||| |||||| |  | |||||||||| ||||||||| || ||||||
Sbjct: 3295 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttcc 3239

>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 163 tttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggggagcttcctcat 222
           |||||||||||| |||| |||||||   ||||| || || || |||| |||||| |||||
Sbjct: 451 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagctttctcat 510

                    
Query: 223 gtcctcctc 231
           |||||||||
Sbjct: 511 gtcctcctc 519

>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    catttgaattttctataaatg 46
             |||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatg 75688

>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 174  cctcaccgatgacccgcagttgctc 198
            ||||||||||||| |||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 80      tatcaacttccaaacaaaaat 100
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822

>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     tatcaacttccaaacaaaaat 100
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064

>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    tatcaacttccaaacaaaaat 100
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457

>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ccatttgaattttctataaa 44
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189

>gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosome 17, complete
             sequence
          Length = 203927

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tttgaattttctataaatgg 47
             ||||||||||||||||||||
Sbjct: 95019 tttgaattttctataaatgg 95038

>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    atttgaattttctataaatg 46
             ||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatg 74195

>gb|AC127294.4| Mus musculus BAC clone RP23-386L1 from chromosome 3, complete sequence
          Length = 212556

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     aaaatgccagtaggtcccaataaa 119
              ||||||||||||| ||||||||||
Sbjct: 119237 aaaatgccagtagatcccaataaa 119260

>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aacttccaaacaaaaatgcc 103
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766

>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   aacttccaaacaaaaatgcc 103
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668

>emb|AL353706.6| Human DNA sequence from clone RP3-466I7 on chromosome 6 Contains part
             of the LACE1 gene for lactation elevated 1, complete
             sequence
          Length = 104679

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ataaatgggacatcaccacc 59
             ||||||||||||||||||||
Sbjct: 37500 ataaatgggacatcaccacc 37519

>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gagcttcctcatgtcctcct 230
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735

>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   gcttcctcatgtcctcctct 232
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526

>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aacttccaaacaaaaatgcc 103
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621

>emb|BX825671.1|CNS0A66W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL55ZA07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 723

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 193 ttgctcgaaaaaggcgggga 212
           ||||||||||||||||||||
Sbjct: 600 ttgctcgaaaaaggcgggga 619

>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     catttgaattttctataaat 45
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080

>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  cttcctcatgtcctcctctt 233
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986

>dbj|AP006296.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-137N23, complete
             sequence
          Length = 57462

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tttgaattttctataaatgg 47
             ||||||||||||||||||||
Sbjct: 16301 tttgaattttctataaatgg 16320

>dbj|AK116643.1| Ciona intestinalis cDNA, clone:ciad036l23, full insert sequence
          Length = 3646

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  ggggagcttcctcatgtcct 227
            ||||||||||||||||||||
Sbjct: 1697 ggggagcttcctcatgtcct 1716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,001,065
Number of Sequences: 3902068
Number of extensions: 3001065
Number of successful extensions: 56504
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56416
Number of HSP's gapped (non-prelim): 88
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)