ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 8e-67
2ref|XM_474500.1| Oryza sativa (japonica cultivar-group), predic... 248 1e-62
3gb|BT018516.1| Zea mays clone EL01N0430F11.d mRNA sequence 244 2e-61
4emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4,... 161 2e-36
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
6gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, compl... 42 1.4
7dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complet... 42 1.4
8gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 5.5
9gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P... 40 5.5
10gb|AC103674.10| Mus musculus chromosome 15, clone RP24-329A8, co... 40 5.5
11ref|NM_008474.1| Mus musculus keratin complex 2, basic, gene 16 ... 40 5.5
12gb|BC114971.1| Mus musculus keratin complex 2, basic, gene 16, m... 40 5.5
13gb|AY028607.1| Mus musculus type II 65kD keratin (Krt2-16) mRNA,... 40 5.5
14gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's... 40 5.5
15emb|AL009048.1|HS433G13 Human DNA sequence from clone RP3-433G13... 40 5.5
16gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park ... 40 5.5
17gb|AY941829.1| Podarcis sicula RH2 cone opsin (RH2) mRNA, comple... 40 5.5
18emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chro... 40 5.5
19emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chrom... 40 5.5 
>dbj|AK066797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079L05, full
            insert sequence
          Length = 3272

 Score =  262 bits (132), Expect = 8e-67
 Identities = 221/250 (88%), Gaps = 3/250 (1%)
 Strand = Plus / Minus

                                                                        
Query: 163  aacctaactatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccct 222
            ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 2894 aacctaactatctccttattacagggcctttatacaaacctctcgcgacaacaaagccct 2835

                                                                        
Query: 223  ctggaggctgatggtcctccaattcctccaaccagactacctcagagctatctatttcac 282
            ||||||| |||||||||||||||||||||||||| | ||| || | ||||| ||||||||
Sbjct: 2834 ctggaggttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcac 2775

                                                                        
Query: 283  tcggcaaaacaacagatgg---ctccttcactggtgacttccggaagtatgaacagtctc 339
              ||||||||||||| |||    ||| | ||||  ||||||||||||||||||||||| |
Sbjct: 2774 caggcaaaacaacaggtggtgtttcccttactgaagacttccggaagtatgaacagtccc 2715

                                                                        
Query: 340  tcccattctcagcggaataaggtggagaaaggacgtcaaagagtgcacaaggtgtgatgg 399
            |||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 2714 tccccttctcagcagaataaggaggagaaaggacatcaaagagagcacaaggtgtgatcg 2655

                      
Query: 400  ctctgaaagt 409
            ||||||||||
Sbjct: 2654 ctctgaaagt 2645
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>ref|XM_474500.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score =  248 bits (125), Expect = 1e-62
 Identities = 214/243 (88%), Gaps = 3/243 (1%)
 Strand = Plus / Minus

                                                                       
Query: 170 ctatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccctctggagg 229
           |||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 846 ctatctccttattacagggcctttatacaaacctctcgcgacaacaaagccctctggagg 787

                                                                       
Query: 230 ctgatggtcctccaattcctccaaccagactacctcagagctatctatttcactcggcaa 289
            |||||||||||||||||||||||||| | ||| || | ||||| ||||||||  |||||
Sbjct: 786 ttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcaccaggcaa 727

                                                                       
Query: 290 aacaacagatgg---ctccttcactggtgacttccggaagtatgaacagtctctcccatt 346
           |||||||| |||    ||| | ||||  ||||||||||||||||||||||| ||||| ||
Sbjct: 726 aacaacaggtggtgtttcccttactgaagacttccggaagtatgaacagtccctcccctt 667

                                                                       
Query: 347 ctcagcggaataaggtggagaaaggacgtcaaagagtgcacaaggtgtgatggctctgaa 406
           |||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 666 ctcagcagaataaggaggagaaaggacatcaaagagagcacaaggtgtgatcgctctgaa 607

              
Query: 407 agt 409
           |||
Sbjct: 606 agt 604
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>gb|BT018516.1| Zea mays clone EL01N0430F11.d mRNA sequence
          Length = 1432

 Score =  244 bits (123), Expect = 2e-61
 Identities = 210/239 (87%)
 Strand = Plus / Minus

                                                                       
Query: 171 tatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccctctggaggc 230
           |||||||| || ||||||||||| |||| |||||| |||||||||||||| ||||| |||
Sbjct: 959 tatctcctaattacagggcctttatacagacctcttgcaacaacaaagccttctgggggc 900

                                                                       
Query: 231 tgatggtcctccaattcctccaaccagactacctcagagctatctatttcactcggcaaa 290
           |||||||||||||| ||||||||||| ||||||| |||||||||||| |||   ||||||
Sbjct: 899 tgatggtcctccaactcctccaaccaaactacctgagagctatctatctcagcaggcaaa 840

                                                                       
Query: 291 acaacagatggctccttcactggtgacttccggaagtatgaacagtctctcccattctca 350
           ||||||| |||||  |||| | | || || |||||||||||||||| || ||||| ||||
Sbjct: 839 acaacaggtggctgattcatttgagaatttcggaagtatgaacagtgtcgcccatcctca 780

                                                                      
Query: 351 gcggaataaggtggagaaaggacgtcaaagagtgcacaaggtgtgatggctctgaaagt 409
           ||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 779 gcggagtatggtggagaaagaacgtcaaagagagcacaaggtgtgatggctctgaaagt 721
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>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15,
             complete sequence
          Length = 130618

 Score =  161 bits (81), Expect = 2e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                         
Query: 163   aacctaactatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccct 222
             ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 18795 aacctaactatctccttattacagggcctttatacaaacctctcgcgacaacaaagccct 18854

                                                                         
Query: 223   ctggaggctgatggtcctccaattcctccaaccagactacctcagagctatctatttcac 282
             ||||||| |||||||||||||||||||||||||| | ||| || | ||||| ||||||||
Sbjct: 18855 ctggaggttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcac 18914

                          
Query: 283   tcggcaaaacaac 295
               |||||||||||
Sbjct: 18915 caggcaaaacaac 18927



 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 315   gacttccggaagtatgaacagtctctcccattctcagcggaataaggtggagaaaggacg 374
             ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| 
Sbjct: 19043 gacttccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggaca 19102

                                                
Query: 375   tcaaagagtgcacaaggtgtgatggctctgaaagt 409
             |||||||| |||||||||||||| |||||||||||
Sbjct: 19103 tcaaagagagcacaaggtgtgatcgctctgaaagt 19137
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  161 bits (81), Expect = 2e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                           
Query: 163     aacctaactatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccct 222
               ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 3552529 aacctaactatctccttattacagggcctttatacaaacctctcgcgacaacaaagccct 3552588

                                                                           
Query: 223     ctggaggctgatggtcctccaattcctccaaccagactacctcagagctatctatttcac 282
               ||||||| |||||||||||||||||||||||||| | ||| || | ||||| ||||||||
Sbjct: 3552589 ctggaggttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcac 3552648

                            
Query: 283     tcggcaaaacaac 295
                 |||||||||||
Sbjct: 3552649 caggcaaaacaac 3552661



 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                           
Query: 315     gacttccggaagtatgaacagtctctcccattctcagcggaataaggtggagaaaggacg 374
               ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| 
Sbjct: 3552777 gacttccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggaca 3552836

                                                  
Query: 375     tcaaagagtgcacaaggtgtgatggctctgaaagt 409
               |||||||| |||||||||||||| |||||||||||
Sbjct: 3552837 tcaaagagagcacaaggtgtgatcgctctgaaagt 3552871
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>gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, complete genome
          Length = 149705

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    tcacccacaacaggtggtgtg 41
             |||||||||||||||||||||
Sbjct: 89582 tcacccacaacaggtggtgtg 89562
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>dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D
          Length = 149987

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     tcacccacaacaggtggtgtg 41
              |||||||||||||||||||||
Sbjct: 125748 tcacccacaacaggtggtgtg 125768
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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    tcccattctcagcggaataa 359
              ||||||||||||||||||||
Sbjct: 483561 tcccattctcagcggaataa 483580
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>gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P12, complete sequence
          Length = 165197

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   tcccattctcagcggaataa 359
             ||||||||||||||||||||
Sbjct: 77607 tcccattctcagcggaataa 77626
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>gb|AC103674.10| Mus musculus chromosome 15, clone RP24-329A8, complete sequence
          Length = 142740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ggctgatggtcctccaattcctcc 251
              ||||||||| ||||||||||||||
Sbjct: 103564 ggctgatgggcctccaattcctcc 103587
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>ref|NM_008474.1| Mus musculus keratin complex 2, basic, gene 16 (Krt2-16), mRNA
          Length = 2530

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 228 ggctgatggtcctccaattcctcc 251
           ||||||||| ||||||||||||||
Sbjct: 448 ggctgatgggcctccaattcctcc 425
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>gb|BC114971.1| Mus musculus keratin complex 2, basic, gene 16, mRNA (cDNA clone
           MGC:140837 IMAGE:40039508), complete cds
          Length = 2161

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 228 ggctgatggtcctccaattcctcc 251
           ||||||||| ||||||||||||||
Sbjct: 444 ggctgatgggcctccaattcctcc 421
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>gb|AY028607.1| Mus musculus type II 65kD keratin (Krt2-16) mRNA, complete cds
          Length = 2530

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 228 ggctgatggtcctccaattcctcc 251
           ||||||||| ||||||||||||||
Sbjct: 448 ggctgatgggcctccaattcctcc 425
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>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 227741

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    caaagccctctggaggctga 233
              ||||||||||||||||||||
Sbjct: 121260 caaagccctctggaggctga 121279
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>emb|AL009048.1|HS433G13 Human DNA sequence from clone RP3-433G13 on chromosome Xq26.3-28
             Contains a SMT3 suppressor of mif two 3 homolog 1 (yeast)
             (SMT3H1) pseudogene, complete sequence
          Length = 58790

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   actacctcagagctatctat 277
             ||||||||||||||||||||
Sbjct: 50711 actacctcagagctatctat 50730
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>gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 178544

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    actacctcagagctatctat 277
              ||||||||||||||||||||
Sbjct: 160242 actacctcagagctatctat 160223
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>gb|AY941829.1| Podarcis sicula RH2 cone opsin (RH2) mRNA, complete cds
          Length = 1676

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  acagggcctttgtacaaacc 202
            ||||||||||||||||||||
Sbjct: 1645 acagggcctttgtacaaacc 1626
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>emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chromosome 13, complete
              sequence
          Length = 218811

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    agccctctggaggctgatgg 236
              ||||||||||||||||||||
Sbjct: 127676 agccctctggaggctgatgg 127695
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>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete
             sequence
          Length = 110623

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   agcaacaacaaagccctctg 225
             ||||||||||||||||||||
Sbjct: 93778 agcaacaacaaagccctctg 93759


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,603,803
Number of Sequences: 3902068
Number of extensions: 3603803
Number of successful extensions: 66748
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66701
Number of HSP's gapped (non-prelim): 47
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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