Clone Name | rbastl55e02 |
---|---|
Clone Library Name | barley_pub |
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating inorganic pyrophosphatase, complete cds Length = 2649 Score = 551 bits (278), Expect = e-154 Identities = 348/366 (95%), Gaps = 14/366 (3%) Strand = Plus / Minus Query: 8 caatcatcatgatatcattgttcaagggtgggttcaaacattatcgtcgtcatcatggga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2649 caatcatcatgatatcattgttcaagggtgggttcaaacattatcgtcgtcatcatggga 2590 Query: 68 cgaggaaaatttgccaggcacataccaacgagggaggacatctggtctctctcttctact 127 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2589 cgaggaaaatttgccagacacataccaacgagggaggacatctggtctctctcttctact 2530 Query: 128 acatggagctacaagccggtaatgtaatggtgagactaacataacgccttcaagaggcca 187 ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 2529 acatggagctacaagcc-gtaatgtaat-gtgagactaacataacg-cttcaagaggcca 2473 Query: 188 ggggaaaggggggtaggtaaccgcggcaatcctggaatgacattgacaaccaaaaataac 247 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct: 2472 ggggaaaggggggtaggtaactgcggcaatcctgg-atgacattgacaaccaaaaataac 2414 Query: 248 agcagcgcacaacgtacgaa-----ggcggccggccaggcaggcgggggagttattcgtg 302 |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct: 2413 agcagcgcacaacgtacgaacggcgggcgggcgggcaggcaggcgggggagttattcgtg 2354 Query: 303 acagtgtctgtagatcatcgctcgact-----cgagtcctctagatgtacttgaacagca 357 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2353 acagtgtctgtagatcatcgctcgactcatcacgagtcctctagatgtacttgaacagca 2294 Query: 358 gacctc 363 |||||| Sbjct: 2293 gacctc 2288
>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA, complete cds Length = 2671 Score = 176 bits (89), Expect = 3e-41 Identities = 206/239 (86%), Gaps = 17/239 (7%) Strand = Plus / Minus Query: 37 gggttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccaggcacatacc--- 93 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 2617 gggttcaaacattatcgtcgtcatcacgggacgaggaaaatttgccagacacataccaat 2558 Query: 94 aacgagggaggacatctggtctctctcttctactacatggagctacaagccggtaatgta 153 || || ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2557 aatgaccgaggacatctggtctctctcttctactacatggagctacaagccg-----gta 2503 Query: 154 atggtgagactaacataacgccttcaagaggcc-aggggaaag-gggggtaggtaaccgc 211 |||||||||||||| |||| | ||||||||| | ||||||| ||||||| ||| || Sbjct: 2502 atggtgagactaacgtaacacacccaagaggccaaagggaaagtgggggta---aactgc 2446 Query: 212 ggcaatcctgg---aatgacattgacaaccaaaaataacagcagcgcacaacgtacgaa 267 ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||| Sbjct: 2445 ggcaatcctggaataatgaca-caagaaccaaaaataacagcagcgcacaacatacgaa 2388 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 330 cgagtcctctagatgtacttgaacagcagacctc 363 |||||| ||||||||||||||||||||| ||||| Sbjct: 2327 cgagtcttctagatgtacttgaacagcacacctc 2294
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 39 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3935071 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 3935026
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 39 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40947 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 40902
>dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F19, full insert sequence Length = 2738 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 39 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2692 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 2647
>dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds Length = 5985 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 39 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5951 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 5906
>dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds Length = 2710 Score = 91.7 bits (46), Expect = 1e-15 Identities = 46/46 (100%) Strand = Plus / Minus Query: 39 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2677 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 2632
>emb|BX957342.5| Zebrafish DNA sequence from clone CH211-120P12 in linkage group 13, complete sequence Length = 182888 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 tggtctctctcttctactaca 130 ||||||||||||||||||||| Sbjct: 109831 tggtctctctcttctactaca 109851
>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence Length = 158943 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 acattgacaaccaaaaataa 246 |||||||||||||||||||| Sbjct: 66522 acattgacaaccaaaaataa 66503
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tctctctcttctactacatg 132 |||||||||||||||||||| Sbjct: 137646 tctctctcttctactacatg 137627
>gb|AC146132.3| Pan troglodytes BAC clone RP43-23H13 from 7, complete sequence Length = 164355 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ttcaagaggccaggggaaag 195 |||||||||||||||||||| Sbjct: 84354 ttcaagaggccaggggaaag 84335
>gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, complete sequence Length = 207139 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ctctctcttctactacatgg 133 |||||||||||||||||||| Sbjct: 166627 ctctctcttctactacatgg 166608
>gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosome 18, complete sequence Length = 195911 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ctctctcttctactacatgg 133 |||||||||||||||||||| Sbjct: 178571 ctctctcttctactacatgg 178590
>ref|XM_808881.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506661.50) partial mRNA Length = 2991 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tcatgggacgaggaaaattt 79 |||||||||||||||||||| Sbjct: 1392 tcatgggacgaggaaaattt 1411
>gb|AC072039.19| Homo sapiens 3 BAC RP11-305O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154964 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tctggtctctctcttctact 127 |||||||||||||||||||| Sbjct: 108378 tctggtctctctcttctact 108359
>ref|XM_812966.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511245.110) partial mRNA Length = 2988 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tcatgggacgaggaaaattt 79 |||||||||||||||||||| Sbjct: 1392 tcatgggacgaggaaaattt 1411
>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence Length = 184010 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 acattgacaaccaaaaataa 246 |||||||||||||||||||| Sbjct: 38446 acattgacaaccaaaaataa 38465
>gb|AC142299.1| Pan troglodytes BAC clone RP43-121O18 from 7, complete sequence Length = 146878 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ttcaagaggccaggggaaag 195 |||||||||||||||||||| Sbjct: 105556 ttcaagaggccaggggaaag 105575
>emb|AL035692.10|HS329N18 Human DNA sequence from clone RP3-329N18 on chromosome 6q22.1-22.33, complete sequence Length = 84764 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tctggtctctctcttctact 127 |||||||||||||||||||| Sbjct: 50835 tctggtctctctcttctact 50816
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 acattgacaaccaaaaataa 246 |||||||||||||||||||| Sbjct: 77255 acattgacaaccaaaaataa 77274
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence Length = 181462 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 acattgacaaccaaaaataa 246 |||||||||||||||||||| Sbjct: 33181 acattgacaaccaaaaataa 33200
>gb|AC009198.8|AC009198 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone BACR19C12, complete sequence Length = 171134 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tctagatgtacttgaacagc 356 |||||||||||||||||||| Sbjct: 76960 tctagatgtacttgaacagc 76941
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183111 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 acattgacaaccaaaaataa 246 |||||||||||||||||||| Sbjct: 80094 acattgacaaccaaaaataa 80075
>gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44 of 83 of the complete sequence Length = 308012 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tctagatgtacttgaacagc 356 |||||||||||||||||||| Sbjct: 137931 tctagatgtacttgaacagc 137912
>dbj|AB044479.1| Volvox rousseletii chloroplast psbC gene for photosystem II CP43 apoprotein, strain:UTEX 1862 Length = 780 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 aaccaaaaataacagcagcg 254 |||||||||||||||||||| Sbjct: 370 aaccaaaaataacagcagcg 351
>dbj|AB044478.1| Volvox globator chloroplast psbC gene for photosystem II CP43 apoprotein, strain:UTEX 955 Length = 780 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 aaccaaaaataacagcagcg 254 |||||||||||||||||||| Sbjct: 370 aaccaaaaataacagcagcg 351
>dbj|AB044477.1| Volvox barberi chloroplast psbC gene for photosystem II CP43 apoprotein, strain:UTEX 804 Length = 780 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 aaccaaaaataacagcagcg 254 |||||||||||||||||||| Sbjct: 370 aaccaaaaataacagcagcg 351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,917,999 Number of Sequences: 3902068 Number of extensions: 2917999 Number of successful extensions: 54215 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54148 Number of HSP's gapped (non-prelim): 61 length of query: 363 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 341 effective length of database: 17,147,199,772 effective search space: 5847195122252 effective search space used: 5847195122252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)