ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AROA_SHISO (Q9ZFF7) 3-phosphoshikimate 1-carboxyvinyltransferase... 29 2.4
2AROA_SHIDY (O87006) 3-phosphoshikimate 1-carboxyvinyltransferase... 29 2.4
3AROA_ECOLI (P0A6D3) 3-phosphoshikimate 1-carboxyvinyltransferase... 29 2.4
4AROA_ECOL6 (Q8FJB6) 3-phosphoshikimate 1-carboxyvinyltransferase... 29 2.4
5AROA_ECO57 (P0A6D4) 3-phosphoshikimate 1-carboxyvinyltransferase... 29 2.4
6RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4 29 2.4
7ARE1_YEAST (P25628) Sterol O-acyltransferase 1 (EC 2.3.1.26) (St... 28 4.1
8YIM6_BPPH1 (P10430) Hypothetical immunity region protein 6 28 6.9
9LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 27 9.1

>AROA_SHISO (Q9ZFF7) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 427

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 385 LGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQLG 239
           LG++D +      +  R I  L +  + G  KIT    E YPP+ LQ G
Sbjct: 108 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG 156



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>AROA_SHIDY (O87006) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 427

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 385 LGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQLG 239
           LG++D +      +  R I  L +  + G  KIT    E YPP+ LQ G
Sbjct: 108 LGSNDIVLTGEPRMKERPIGHLVDALRLGRAKITYLEQENYPPLRLQGG 156



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>AROA_ECOLI (P0A6D3) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 427

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 385 LGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQLG 239
           LG++D +      +  R I  L +  + G  KIT    E YPP+ LQ G
Sbjct: 108 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG 156



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>AROA_ECOL6 (Q8FJB6) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 427

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 385 LGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQLG 239
           LG++D +      +  R I  L +  + G  KIT    E YPP+ LQ G
Sbjct: 108 LGSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGG 156



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>AROA_ECO57 (P0A6D4) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 427

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 385 LGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQLG 239
           LG++D +      +  R I  L +  + G  KIT    E YPP+ LQ G
Sbjct: 108 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG 156



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>RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4|
          Length = 933

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -3

Query: 175 STPVLSFSTAIHSNQADSVCTSQKQCIIYLDVLARMEGRWNCQVCIQR 32
           STP+  F+ A+ ++QA+  C S  +  I  +   + +G+  C  C+++
Sbjct: 86  STPICEFN-AVSNSQANHPCCSNCRAFINSNAFGKFKGQHYCLPCLRK 132



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>ARE1_YEAST (P25628) Sterol O-acyltransferase 1 (EC 2.3.1.26) (Sterol-ester|
           synthase 1)
          Length = 610

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 347 FVVKVHFQIEERIPDWKWQDY 285
           FVV VH+ +++RI +WKW  +
Sbjct: 245 FVVFVHWLVKKRIINWKWTGF 265



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>YIM6_BPPH1 (P10430) Hypothetical immunity region protein 6|
          Length = 70

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 347 FVVKVHFQIEERIPDWKWQDYGKVHRRL 264
           ++   +F+ E +IP  K QDY K+H+++
Sbjct: 26  YMQNANFKREPKIPQEKQQDYDKLHQKI 53



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 11  HTVID--CISLNTHLTIPSPFHPCQHI*VNDTLLL*GTNRISLI 136
           H V++   I+ N HL++  P +   H    DT+ + G  R+SL+
Sbjct: 523 HAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLV 566


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,219,278
Number of Sequences: 219361
Number of extensions: 1021660
Number of successful extensions: 2313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2313
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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