ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complet... 42 0.82
2gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-73... 42 0.82
3gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-72... 42 0.82
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.82
5dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.82
6gb|AC155813.2| Mus musculus BAC clone RP24-167L2 from 9, complet... 42 0.82
7emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-5... 42 0.82
8emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-9... 42 0.82
9gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, co... 40 3.2
10emb|AL135903.12| Human DNA sequence from clone RP11-30P6 on chro... 40 3.2
11emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, compl... 40 3.2
12emb|CR759967.5| Zebrafish DNA sequence from clone DKEY-94P13 in ... 40 3.2
13gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, c... 40 3.2
14gb|AC011357.5| Homo sapiens chromosome 5 clone CTC-362D12, compl... 40 3.2
15gb|AC011386.6| Homo sapiens chromosome 5 clone CTB-15P5, complet... 40 3.2
16gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, comple... 40 3.2
17gb|AC015911.8| Homo sapiens chromosome 17, clone RP11-1094M14, c... 40 3.2
18gb|AC068576.7| Homo sapiens chromosome 17, clone RP11-727G18, co... 40 3.2
19gb|AC060766.8| Homo sapiens chromosome 17, clone RP11-686D22, co... 40 3.2
20gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 40 3.2
21gb|AC157480.3| Pan troglodytes BAC clone CH251-394P5 from chromo... 40 3.2
22gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete ... 40 3.2
23ref|NM_072466.2| Caenorhabditis elegans F10G2.1 (F10G2.1) mRNA, ... 40 3.2
24gb|U64836.1| Caenorhabditis elegans cosmid F10G2, complete sequence 40 3.2
25gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, com... 40 3.2
26gb|AC159904.2| Pan troglodytes BAC clone CH251-488L1 from chromo... 40 3.2
27emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chr... 40 3.2
28dbj|AP001524.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.2
29dbj|AP000916.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.2

>gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complete sequence
          Length = 121661

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   agccaagactgaagaaggcca 121
             |||||||||||||||||||||
Sbjct: 40030 agccaagactgaagaaggcca 40050



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>gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-736G13, complete sequence
          Length = 149144

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 148  gggcatctccccaaattcagg 168
            |||||||||||||||||||||
Sbjct: 6802 gggcatctccccaaattcagg 6822



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>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence
          Length = 182495

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   gggcatctccccaaattcagg 168
             |||||||||||||||||||||
Sbjct: 80831 gggcatctccccaaattcagg 80811



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 22       tttctgttttacaaacttcag 42
                |||||||||||||||||||||
Sbjct: 28129567 tttctgttttacaaacttcag 28129547



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>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1717_A09
          Length = 203132

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     tttctgttttacaaacttcag 42
              |||||||||||||||||||||
Sbjct: 119214 tttctgttttacaaacttcag 119194



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>gb|AC155813.2| Mus musculus BAC clone RP24-167L2 from 9, complete sequence
          Length = 166097

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 72     aaagggaggccgaaaaggagagaga 96
              |||||||||| ||||||||||||||
Sbjct: 149744 aaagggaggcagaaaaggagagaga 149720



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>emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-507K2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197550

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   gaaggccaaaagagaagcatattta 138
             ||||||||||| |||||||||||||
Sbjct: 24058 gaaggccaaaacagaagcatattta 24034



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>emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 213239

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 114  gaaggccaaaagagaagcatattta 138
            ||||||||||| |||||||||||||
Sbjct: 3211 gaaggccaaaacagaagcatattta 3235



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>gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, complete sequence
          Length = 213855

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    gattatgatcccagctcaaaagca 65
             ||||||| ||||||||||||||||
Sbjct: 46828 gattatgttcccagctcaaaagca 46805



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>emb|AL135903.12| Human DNA sequence from clone RP11-30P6 on chromosome 6 Contains a
             karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene,
             a keratin 18 (KRT18) pseudogene, a tumor protein,
             translationally-controlled 1 (TPT1) pseudogene, a
             pseudogene similar to dUTP pyrophosphatase (DUT), the NT5E
             gene for 5'-nucleotidase ecto (CD73) and a CpG island,
             complete sequence
          Length = 170232

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tgaagaaggccaaaagagaa 129
             ||||||||||||||||||||
Sbjct: 59784 tgaagaaggccaaaagagaa 59803



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>emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, complete sequence
          Length = 198202

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gccaaaagagaagcatattt 137
              ||||||||||||||||||||
Sbjct: 191884 gccaaaagagaagcatattt 191865



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>emb|CR759967.5| Zebrafish DNA sequence from clone DKEY-94P13 in linkage group 5,
             complete sequence
          Length = 61816

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aaaacagccaagactgaaga 115
             ||||||||||||||||||||
Sbjct: 51079 aaaacagccaagactgaaga 51098



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>gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, complete sequence
          Length = 217659

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    gattatgatcccagctcaaaagca 65
             ||||||| ||||||||||||||||
Sbjct: 24662 gattatgttcccagctcaaaagca 24685



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>gb|AC011357.5| Homo sapiens chromosome 5 clone CTC-362D12, complete sequence
          Length = 138533

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    aagggaggccgaaaaggagagaga 96
             ||||||||| ||||||||||||||
Sbjct: 82329 aagggaggcagaaaaggagagaga 82352



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>gb|AC011386.6| Homo sapiens chromosome 5 clone CTB-15P5, complete sequence
          Length = 192530

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 73     aagggaggccgaaaaggagagaga 96
              ||||||||| ||||||||||||||
Sbjct: 168771 aagggaggcagaaaaggagagaga 168748



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>gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, complete sequence
          Length = 137716

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gagagagaaaacagccaaga 108
             ||||||||||||||||||||
Sbjct: 13632 gagagagaaaacagccaaga 13651



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>gb|AC015911.8| Homo sapiens chromosome 17, clone RP11-1094M14, complete sequence
          Length = 181561

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gaaaaggagagagaaaacag 102
             ||||||||||||||||||||
Sbjct: 10912 gaaaaggagagagaaaacag 10893



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>gb|AC068576.7| Homo sapiens chromosome 17, clone RP11-727G18, complete sequence
          Length = 90150

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gaaaaggagagagaaaacag 102
             ||||||||||||||||||||
Sbjct: 43404 gaaaaggagagagaaaacag 43385



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>gb|AC060766.8| Homo sapiens chromosome 17, clone RP11-686D22, complete sequence
          Length = 169675

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    gaaaaggagagagaaaacag 102
             ||||||||||||||||||||
Sbjct: 14333 gaaaaggagagagaaaacag 14352



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>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ctatttttcaaaacaattag 196
             ||||||||||||||||||||
Sbjct: 23989 ctatttttcaaaacaattag 23970



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>gb|AC157480.3| Pan troglodytes BAC clone CH251-394P5 from chromosome unknown,
            complete sequence
          Length = 179883

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   gaaaaggagagagaaaacag 102
            ||||||||||||||||||||
Sbjct: 8687 gaaaaggagagagaaaacag 8668



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>gb|AC022684.5|AC022684 Homo sapiens, clone RP11-59H18, complete sequence
          Length = 164879

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 42     gattatgatcccagctcaaaagca 65
              ||||||| ||||||||||||||||
Sbjct: 123401 gattatgttcccagctcaaaagca 123424



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>ref|NM_072466.2| Caenorhabditis elegans F10G2.1 (F10G2.1) mRNA, complete cds
          Length = 680

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 tttcaaaacaattagcgaaa 201
           ||||||||||||||||||||
Sbjct: 244 tttcaaaacaattagcgaaa 225



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>gb|U64836.1| Caenorhabditis elegans cosmid F10G2, complete sequence
          Length = 26539

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   tttcaaaacaattagcgaaa 201
             ||||||||||||||||||||
Sbjct: 17427 tttcaaaacaattagcgaaa 17408



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>gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, complete sequence
          Length = 94576

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gccaaaagagaagcatattt 137
             ||||||||||||||||||||
Sbjct: 34813 gccaaaagagaagcatattt 34794



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>gb|AC159904.2| Pan troglodytes BAC clone CH251-488L1 from chromosome unknown, complete
             sequence
          Length = 177340

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gaaaaggagagagaaaacag 102
             ||||||||||||||||||||
Sbjct: 55776 gaaaaggagagagaaaacag 55757



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>emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chromosome 17, complete
              sequence
          Length = 177152

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gccaaaagagaagcatattt 137
              ||||||||||||||||||||
Sbjct: 174097 gccaaaagagaagcatattt 174078



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>dbj|AP001524.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-702P11, complete
             sequence
          Length = 150847

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   gccaaaagagaagcatattt 137
             ||||||||||||||||||||
Sbjct: 32504 gccaaaagagaagcatattt 32523



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>dbj|AP000916.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-728D14, complete
              sequence
          Length = 192926

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    gccaaaagagaagcatattt 137
              ||||||||||||||||||||
Sbjct: 142989 gccaaaagagaagcatattt 143008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,071,603
Number of Sequences: 3902068
Number of extensions: 3071603
Number of successful extensions: 67823
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67745
Number of HSP's gapped (non-prelim): 78
length of query: 250
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 228
effective length of database: 17,147,199,772
effective search space: 3909561548016
effective search space used: 3909561548016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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