ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, comp... 44 0.27
2gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, co... 44 0.27
3emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in... 42 1.1
4gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, com... 42 1.1
5emb|AL391361.18| Human DNA sequence from clone RP11-235G24 on ch... 42 1.1
6emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, ... 42 1.1
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.2
8gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, com... 40 4.2
9emb|AL157377.7| Human DNA sequence from clone RP3-334I18 on chro... 40 4.2
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
11gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.2
12emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in... 40 4.2
13emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chro... 40 4.2
14gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complet... 40 4.2
15gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a ... 40 4.2
16dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds 40 4.2 
>gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, complete sequence
          Length = 192061

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    ttcccaaatacagtctgggatt 100
             ||||||||||||||||||||||
Sbjct: 79433 ttcccaaatacagtctgggatt 79454
to top
>gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, complete sequence
          Length = 233298

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 79    ttcccaaatacagtctgggatt 100
             ||||||||||||||||||||||
Sbjct: 53201 ttcccaaatacagtctgggatt 53180
to top
>emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7, complete
              sequence
          Length = 158510

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 160    acattcagcaaacgaccaacatgaa 184
              ||||||||||||| |||||||||||
Sbjct: 105223 acattcagcaaactaccaacatgaa 105199



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 160    acattcagcaaacgaccaacatgaa 184
              ||||||||||||| |||||||||||
Sbjct: 104779 acattcagcaaactaccaacatgaa 104755
to top
>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence
          Length = 195549

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 60     aggcaatagtacaaatacttt 80
              |||||||||||||||||||||
Sbjct: 125157 aggcaatagtacaaatacttt 125177
to top
>emb|AL391361.18| Human DNA sequence from clone RP11-235G24 on chromosome 6 Contains a
             novel gene, a pseudogene similar to lipoproteins (contains
             kringle domains), a novel gene and part of a novel gene,
             complete sequence
          Length = 99162

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   atgaataatagaacaagagtaaata 204
             |||||| ||||||||||||||||||
Sbjct: 90448 atgaattatagaacaagagtaaata 90424
to top
>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence
          Length = 164481

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 160   acattcagcaaacgaccaacatgaa 184
             ||||||||||||| |||||||||||
Sbjct: 49711 acattcagcaaactaccaacatgaa 49687



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 160   acattcagcaaacgaccaacatgaa 184
             ||||||||||||| |||||||||||
Sbjct: 49271 acattcagcaaactaccaacatgaa 49247
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 175     ccaacatgaataatagaaca 194
               ||||||||||||||||||||
Sbjct: 9290485 ccaacatgaataatagaaca 9290466
to top
>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence
          Length = 251855

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     tttcattcaaacagaggcaa 65
              ||||||||||||||||||||
Sbjct: 100346 tttcattcaaacagaggcaa 100365
to top
>emb|AL157377.7| Human DNA sequence from clone RP3-334I18 on chromosome 6 Contains part
             of the ENPP3 (ectonucleotide
             pyrophosphatase/phosphodiesterase 3) gene, a ribosomal
             protein L15 pseudogene, ESTs, STSs and GSSs, complete
             sequence
          Length = 56031

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   aataatagaacaagagtaaa 202
             ||||||||||||||||||||
Sbjct: 28916 aataatagaacaagagtaaa 28897
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 175     ccaacatgaataatagaaca 194
               ||||||||||||||||||||
Sbjct: 9288318 ccaacatgaataatagaaca 9288299
to top
>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0014A21, from chromosome 3, complete sequence
          Length = 134014

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ccaacatgaataatagaaca 194
             ||||||||||||||||||||
Sbjct: 65768 ccaacatgaataatagaaca 65787
to top
>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19,
             complete sequence
          Length = 154891

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ggcaatagtacaaatacttt 80
             ||||||||||||||||||||
Sbjct: 94106 ggcaatagtacaaatacttt 94125
to top
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete
              sequence
          Length = 188772

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tgtcatttataaagggtctg 292
              ||||||||||||||||||||
Sbjct: 111132 tgtcatttataaagggtctg 111151
to top
>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence
          Length = 140915

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   aataatagaacaagagtaaa 202
             ||||||||||||||||||||
Sbjct: 36608 aataatagaacaagagtaaa 36627
to top
>gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a subunit of uricase II,
            complete cds
          Length = 4783

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   aacagaggcaatagtacaaa 74
            ||||||||||||||||||||
Sbjct: 2445 aacagaggcaatagtacaaa 2464
to top
>dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds
          Length = 1220

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  aacagaggcaatagtacaaa 74
           ||||||||||||||||||||
Sbjct: 448 aacagaggcaatagtacaaa 467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,028,586
Number of Sequences: 3902068
Number of extensions: 4028586
Number of successful extensions: 51083
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51034
Number of HSP's gapped (non-prelim): 49
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top