>RNF14_MOUSE (Q9JI90) RING finger protein 14 (Androgen receptor-associated|
           protein 54) (Triad2 protein)
          Length = 485

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
 Frame = +1

Query: 43  GYCYQNLQNVGHNCSTS-LPPLSHKKEAPDDYDGNNEASITASRSQIQQSQV-----ELA 204
           G   ++LQN G   +   LPPL    E P DY  ++  S T S   +  +Q+      L 
Sbjct: 52  GNSNESLQNSGFEYTICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLD 111

Query: 205 TLWLGH----VLPPWRTIKANQPRG*DGLQIFLELKLGCE--LYRKFLADYSYTPEAGM 363
            LW  H    VL  W      +      +    ELK+G +  + R+  A  S + E G+
Sbjct: 112 NLWEEHRGRVVLFAWMQFLKEETLTYLNIVSPFELKMGSQKKVQRRATAQASSSTELGV 170

>ARHGF_HUMAN (O94989) Rho guanine nucleotide exchange factor 15 (Vsm-RhoGEF)|
          Length = 841

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 150 SVYNGVQIADPTIASGASDFMAGARTASVENNQGKPTQRIRRTANISGTKAWL 308
           S+    Q+ DP   SG   F    R + + N+QG+PT R+ + +++S  + WL
Sbjct: 691 SLVQAQQVPDP---SGPPTF----RLSLLSNHQGRPTHRLLQASSLSDMQRWL 736

>YBL7_YEAST (P38213) Protein YBR007C|
          Length = 736

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 68  TWDTIVPPHSPHSATKKKPQMTTTGIMKRL*RRPDRRSNNRK 193
           T D  +PP  P+ A KKK   T+   +K+L + P  R+ N+K
Sbjct: 349 TNDISLPPTPPYKAHKKK---TSLNSLKKLFKSPRTRAKNKK 387

>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)|
          Length = 731

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 142 NNEASITASRSQIQQSQVELATLWLGHVLPPWRTIKANQPRG 267
           +N+  +  +RS     Q   A  W G VL  W T++A  P G
Sbjct: 402 SNKRVVILTRSAFAGQQRHSAISWSGDVLGDWATLRAQIPAG 443

>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)|
          Length = 1947

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 55   QNLQNVGHNCSTSLPPLSHKKEAPDDYDGNNEASITASRSQIQQSQ 192
            QNL N+  N +  L  L  K+   D+  G NEAS   S++ ++  Q
Sbjct: 1343 QNLSNLSKNLARELEQL--KESIEDEVAGKNEASRQLSKASVELDQ 1386

>TFE2_RAT (P21677) Transcription factor E2-alpha (Immunoglobulin|
           enhancer-binding factor E12/E47) (Transcription factor
           3) (TCF-3) (Transcription regulator Pan)
          Length = 649

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 88  TSLPPLSHKKEAPDDYDGNNEASITASRSQIQQSQVE 198
           +SLP LS +   PD + G   A +TA  S+I++ + E
Sbjct: 465 SSLPDLSQRP--PDSFSGLGRAGVTAGASEIKREEKE 499

>SYFB_ENTFA (Q836J5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 807

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 168 QIADPTIASGASDFMAGARTASVENNQGKPTQRIR--RTANISGTKAWL 308
           Q  DP +   ASD +    T +VE++Q  P  +IR  +   I+ +  WL
Sbjct: 195 QFNDPELKEDASDNVENYVTVTVEDSQDAPAYQIRVIKDVTIAESPQWL 243

>TFE2_MOUSE (P15806) Transcription factor E2-alpha (Immunoglobulin|
           enhancer-binding factor E12/E47) (Transcription factor
           3) (TCF-3) (Transcription factor A1)
          Length = 651

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 88  TSLPPLSHKKEAPDDYDGNNEASITASRSQIQQSQVE 198
           +SLP LS +   PD Y G   A  TA  S+I++ + E
Sbjct: 467 SSLPDLSQRP--PDSYSGLGRAGTTAGASEIKREEKE 501

>POLS2_MOUSE (Q5K2P8) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2) (Protease serine 36)
          Length = 849

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 17  GFYVIQQM-WDIVIRTCKTWDTIVPPHSPHSATKKKPQMTTTGIM 148
           G Y+  Q+ WD      +T     PPH+ H A   +PQ T  G++
Sbjct: 550 GAYLEDQLTWDWGPEGEETEKQTCPPHTEHGACGLRPQSTPAGVL 594

>RNF14_HUMAN (Q9UBS8) RING finger protein 14 (Androgen receptor-associated|
           protein 54) (Triad2 protein) (HFB30)
          Length = 474

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
 Frame = +1

Query: 61  LQNVGHNCSTS-LPPLSHKKEAPDDYDGNNEASITASRSQIQQSQV-----ELATLWLGH 222
           LQN G   +   LPPL    E P DY  ++  S T S   +  +Q+      L  LW  H
Sbjct: 58  LQNSGFEYTICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEH 117

Query: 223 ----VLPPWRTIKANQPRG*DGLQIFLELKLGCE 312
               VL  W      +      +    ELK+G +
Sbjct: 118 RGSVVLFAWMQFLKEETLAYLNIVSPFELKIGSQ 151

>APOA_MACMU (P14417) Apolipoprotein(a) (EC 3.4.21.-) (Apo(a)) (Lp(a))|
           (Fragment)
          Length = 1420

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 56  RTCKTWDTIVPPHSPHSATKKKPQMTTTGIMKRL*RRPD 172
           RTC+ W ++    +PHS ++        G++K   R PD
Sbjct: 411 RTCQAWSSM----TPHSHSRTPENYPNAGLVKNYCRNPD 445

>PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein (CP-47|
           protein)
          Length = 508

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +1

Query: 25  RYTTNVGYCYQNLQ-----NVGHNCSTSLP-PLSHKKEAPDDYDGNNEASITASRSQIQQ 186
           RY  + GY  + ++     ++   CS S        K A  DY GNN A     RS    
Sbjct: 272 RYQWDKGYFQEEIERRVQASLSDGCSLSEAWGAISPKLAFYDYIGNNPAKGGLFRSGPMN 331

Query: 187 SQVELATLWLGHVL 228
           +   +AT WLGH +
Sbjct: 332 NGDGIATAWLGHAV 345

>PSBB_CHLVU (P56307) Photosystem II P680 chlorophyll A apoprotein (CP-47|
           protein)
          Length = 508

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +1

Query: 25  RYTTNVGYCYQNLQN-VGHNCSTSLPPLSHKKEAPD-----DYDGNNEASITASRSQIQQ 186
           RY  ++G+  Q ++  V  N S          E P+     DY GNN A     R+    
Sbjct: 272 RYQWDLGFFQQEIERRVQTNLSEGKSASQAWAEIPEKLAFYDYIGNNPAKGGLFRAGAMN 331

Query: 187 SQVELATLWLGHVL 228
           S   +A  WLGH +
Sbjct: 332 SGDGIAVGWLGHAV 345

>PSBB_ADICA (Q85FJ7) Photosystem II P680 chlorophyll A apoprotein (CP-47|
           protein)
          Length = 508

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +1

Query: 25  RYTTNVGYCYQNLQN---VGHNCSTSLPPLSHK---KEAPDDYDGNNEASITASRSQIQQ 186
           RY  + GY  Q ++    +G   + SL  +  K   K A  DY GNN A     R+    
Sbjct: 272 RYQWDQGYFQQEIERRIRLGEAENLSLSQVWSKIPEKLAFYDYIGNNPAKGGLFRAGAMD 331

Query: 187 SQVELATLWLGHVL 228
           +   +A  WLGH L
Sbjct: 332 NGDGIAVGWLGHAL 345

>COTN_BACSU (P54507) Spore coat-associated protein N|
          Length = 261

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 SVYNGVQIADPTIASGASDFMAGARTASVENNQGKPTQRIRR 275
           + +N ++  D T ASG  D  A   +ASV  +  KP  ++ +
Sbjct: 27  AAFNDIKSKDATFASGTLDLSAKENSASVNLSNLKPGDKLTK 68

>APOA_HUMAN (P08519) Apolipoprotein(a) precursor (EC 3.4.21.-) (Apo(a)) (Lp(a))|
          Length = 4548

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 56   RTCKTWDTIVPPHSPHSATKKKPQMTTTGIMKRL*RRPD 172
            RTC+ W ++    +PHS ++        G++K   R PD
Sbjct: 3467 RTCQAWSSM----TPHSHSRTPAYYPNAGLIKNYCRNPD 3501

>YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 intergenic|
            region
          Length = 1658

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 73   GHNCSTSLP--PLSHKKEAPDDYDGNNEASITASRS 174
            G+  ST LP  P S K+E  D Y  +N  +ITA +S
Sbjct: 1441 GNIPSTDLPSDPPSDKEEVTDSYPYSNSENITAEKS 1476

>LYXK_HAEIN (P44991) Probable L-xylulose kinase (EC 2.7.1.53) (L-xylulokinase)|
          Length = 485

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 193 VELATLWLGHVLPPWRTIKANQP 261
           + L TLW+GH +   R IK N+P
Sbjct: 124 ITLQTLWMGHPVSILRWIKENEP 146

>EMP47_YEAST (P43555) 47 kDa endomembrane protein precursor (Endosomal P44|
           protein)
          Length = 445

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 91  SLPPLSHKKEAPDDYDGNNEASITASRSQIQQSQVELATLWL 216
           SLP L + ++ P+++    +AS+   R  +   Q    +LWL
Sbjct: 45  SLPDLINARKVPNNWQTGEQASLEEGRIVLTSKQNSKGSLWL 86

>PRC_SALTY (P43669) Tail-specific protease precursor (EC 3.4.21.102) (Protease|
           Re) (PRC protein) (C-terminal-processing peptidase)
          Length = 682

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 EAPDDYDGNNEASITASRSQIQQSQVELATLWLGHV 225
           E P D+ GN+  ++  S++   + + EL  LW G V
Sbjct: 135 ERPMDFTGNDTFNLDRSKAPWPKDEAELNALWDGKV 170

>YGH5_YEAST (P53159) Hypothetical 44.6 kDa protein in RPL7A-HSF1 intergenic|
           region
          Length = 387

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 7   FPHRLLRYTTNVGYCYQNLQNV-GHNCSTSLPPLSHKKEAPDDYDGNNEASITASRSQI 180
           F  RL R T  + +    ++   G NCS      S +K A  D DG  +  I+A  S I
Sbjct: 247 FRRRLQRQTDTISFLKDQIRRERGLNCSNDKVSHSKRKHATTDGDGTFKNFISAVPSNI 305

>PGH2_CHICK (P27607) Prostaglandin G/H synthase 2 precursor (EC 1.14.99.1)|
           (Cyclooxygenase-2) (COX-2) (Prostaglandin-endoperoxide
           synthase 2) (Prostaglandin H2 synthase 2) (PGH synthase
           2) (PGHS-2) (PHS II) (Mitogen-inducible PGHS)
          Length = 603

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 34  TNVGYCYQNLQNVGHNCSTSLPPLSHKKEAPD 129
           +N+ Y  ++L  VGH+C T +  +  KKE PD
Sbjct: 129 SNLSYYTRSLPPVGHDCPTPM-GVKGKKELPD 159

>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC|
            3.1.3.48) (Embryonic stem cell protein-tyrosine
            phosphatase) (ES cell phosphatase) (Osteotesticular
            protein-tyrosine phosphatase) (OST-PTP)
          Length = 1711

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 176  CDLDAVIDASLFPS*SSGASFLWLSGGSEVEQL 78
            C  D++++ASLFP   SG   + L+G +  ++L
Sbjct: 1488 CPEDSMLEASLFPGGPSGCDHVVLTGSAGPKEL 1520

>YH2O_CAEEL (Q23223) Putative helicase W08D2.7 (EC 3.6.1.-)|
          Length = 1026

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 203 RLYGWGTYCLRGEQSRQTNPEDKTDCKYFWN*SLAVNSIGNF*P 334
           R + WG   +  +  ++ NP+D+ D  Y  +  +A+N+ G F P
Sbjct: 654 RDFKWG---ILNQFKKEQNPDDRNDQIYLCDMMIAINTEGRFDP 694

>RS4_LACJO (Q74K05) 30S ribosomal protein S4|
          Length = 203

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 25  RYTTNVGYCYQNLQNVGHNCSTSLPPLSHKKEAPDDYDGNNEASITASRSQIQQSQ 192
           RYT   G  ++  + +G + S +   +S +  AP D+  NN A ++    Q+++ Q
Sbjct: 3   RYT---GPSWKRSRRLGISLSGTGKEISRRNYAPGDHGPNNRAKVSEYGQQLKEKQ 55

>GDS1_BOVIN (Q04173) Rap1 GTPase-GDP dissociation stimulator 1 (SMG P21|
           stimulatory GDP/GTP exchange protein) (SMG GDS protein)
           (Exchange factor smgGDS)
          Length = 558

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 361 CLLQACTSNRLKISDRVHSQALVPEIFAVRLI 266
           CLLQA T N ++ S+++    ++ ++FA  LI
Sbjct: 29  CLLQALTQNNMETSEKIQGSGIL-QVFASLLI 59

>FPRP_HUMAN (Q9P2B2) Prostaglandin F2 receptor negative regulator precursor|
           (Prostaglandin F2-alpha receptor regulatory protein)
           (Prostaglandin F2-alpha receptor-associated protein)
           (CD9 partner 1) (CD9P-1) (CD315 antigen)
          Length = 879

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 DYDGNNEASITASRSQIQQSQVELATLW 213
           DYDG +E +   S S +  S VELA+ W
Sbjct: 47  DYDGPSEQNFDWSFSSLGSSFVELASTW 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,563,941
Number of Sequences: 219361
Number of extensions: 1080983
Number of successful extensions: 3130
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)