ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 60 5e-06
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
3dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
4ref|XM_514310.1| PREDICTED: Pan troglodytes similar to RAC-gamma... 44 0.31
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.2
6emb|Z97205.1|HS155D22 Human DNA sequence from clone RP1-155D22 o... 42 1.2
7gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.2
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
9emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chrom... 40 4.9
10emb|AL009194.1|DMC152A3 Drosophila melanogaster cosmid clone 152A3 40 4.9
11emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chr... 40 4.9
12gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 geno... 40 4.9
13gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell... 40 4.9
14gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell... 40 4.9
15gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, co... 40 4.9
16dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 4.9
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
18gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 o... 40 4.9
19dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.9
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
21emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 i... 40 4.9
22emb|AL671991.5| Mouse DNA sequence from clone RP23-343L7 on chro... 40 4.9

>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 166   tccagatcgcagatccaacaatcgcaagtggagctagcgactttat 211
             ||||||||||||||||||||||  |||||||||| ||| |||||||
Sbjct: 91614 tccagatcgcagatccaacaattacaagtggagcaagcaactttat 91659



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 166      tccagatcgcagatccaacaatcgcaagtggagctagcgactttat 211
                ||||||||||||||||||||||  |||||||||| ||| |||||||
Sbjct: 29954862 tccagatcgcagatccaacaattacaagtggagcaagcaactttat 29954907



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>dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052D05, full
            insert sequence
          Length = 3158

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 166  tccagatcgcagatccaacaatcgcaagtggagctagcgactttat 211
            ||||||||||||||||||||||  |||||||||| ||| |||||||
Sbjct: 3098 tccagatcgcagatccaacaattacaagtggagcaagcaactttat 3053



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>ref|XM_514310.1| PREDICTED: Pan troglodytes similar to RAC-gamma
           serine/threonine-protein kinase (RAC-PK-gamma) (Protein
           kinase Akt-3) (Protein kinase B, gamma) (PKB gamma)
           (LOC457863), mRNA
          Length = 1209

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 22  ttacgttatacaacaaatgtgg 43
           ||||||||||||||||||||||
Sbjct: 578 ttacgttatacaacaaatgtgg 599



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 171      atcgcagatccaacaatcgca 191
                |||||||||||||||||||||
Sbjct: 12629121 atcgcagatccaacaatcgca 12629141



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>emb|Z97205.1|HS155D22 Human DNA sequence from clone RP1-155D22 on chromosome 6q27 Contains a
             novel gene, complete sequence
          Length = 148851

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   ccactcagccacaaaaaagaa 120
             |||||||||||||||||||||
Sbjct: 90298 ccactcagccacaaaaaagaa 90318



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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   atcgcagatccaacaatcgca 191
             |||||||||||||||||||||
Sbjct: 47868 atcgcagatccaacaatcgca 47848



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 171      atcgcagatccaacaatcgca 191
                |||||||||||||||||||||
Sbjct: 12625884 atcgcagatccaacaatcgca 12625904



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>emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chromosome 7, complete
              sequence
          Length = 186089

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    actcagccacaaaaaagaag 121
              ||||||||||||||||||||
Sbjct: 109871 actcagccacaaaaaagaag 109890



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>emb|AL009194.1|DMC152A3 Drosophila melanogaster cosmid clone 152A3
          Length = 24604

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    tccacctcactccccccact 104
             ||||||||||||||||||||
Sbjct: 23705 tccacctcactccccccact 23724



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>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the
             3' end of the Gabrb2 gene for subunit beta 2
             gamma-aminobutyric acid (GABA-A) receptor, complete
             sequence
          Length = 195923

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   gactgcaaatatttctggaa 294
             ||||||||||||||||||||
Sbjct: 29207 gactgcaaatatttctggaa 29226



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>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete
              sequence
          Length = 177565

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ccacctcactccccccactc 105
              ||||||||||||||||||||
Sbjct: 118510 ccacctcactccccccactc 118491



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>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177724

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     tccacctcactccccccact 104
              ||||||||||||||||||||
Sbjct: 160551 tccacctcactccccccact 160570



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>gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 193714

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    tccacctcactccccccact 104
             ||||||||||||||||||||
Sbjct: 19489 tccacctcactccccccact 19508



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>gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, complete sequence
          Length = 158510

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   gaacaatcaaggcaaaccaa 258
             ||||||||||||||||||||
Sbjct: 95736 gaacaatcaaggcaaaccaa 95755



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>dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2523D13, complete
              sequences
          Length = 221091

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    actcagccacaaaaaagaag 121
              ||||||||||||||||||||
Sbjct: 169499 actcagccacaaaaaagaag 169518



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 86       ccacctcactccccccactc 105
                ||||||||||||||||||||
Sbjct: 12645052 ccacctcactccccccactc 12645071



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>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete
              sequence
          Length = 292830

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     tccacctcactccccccact 104
              ||||||||||||||||||||
Sbjct: 120230 tccacctcactccccccact 120249



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>dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-215D10, complete
             sequence
          Length = 167376

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   actcagccacaaaaaagaag 121
             ||||||||||||||||||||
Sbjct: 46212 actcagccacaaaaaagaag 46231



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 86       ccacctcactccccccactc 105
                ||||||||||||||||||||
Sbjct: 12652392 ccacctcactccccccactc 12652411



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>emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 in linkage group 20,
             complete sequence
          Length = 195087

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   caaatatttctggaactaaa 299
             ||||||||||||||||||||
Sbjct: 79614 caaatatttctggaactaaa 79595



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>emb|AL671991.5| Mouse DNA sequence from clone RP23-343L7 on chromosome X, complete
              sequence
          Length = 211866

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    aaatatttctggaactaaag 300
              ||||||||||||||||||||
Sbjct: 196839 aaatatttctggaactaaag 196820


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,873,917
Number of Sequences: 3902068
Number of extensions: 2873917
Number of successful extensions: 46481
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46399
Number of HSP's gapped (non-prelim): 82
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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