Clone Name | rbastl55d05 |
---|---|
Clone Library Name | barley_pub |
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 166 tccagatcgcagatccaacaatcgcaagtggagctagcgactttat 211 |||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct: 91614 tccagatcgcagatccaacaattacaagtggagcaagcaactttat 91659
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 166 tccagatcgcagatccaacaatcgcaagtggagctagcgactttat 211 |||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct: 29954862 tccagatcgcagatccaacaattacaagtggagcaagcaactttat 29954907
>dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052D05, full insert sequence Length = 3158 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 166 tccagatcgcagatccaacaatcgcaagtggagctagcgactttat 211 |||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct: 3098 tccagatcgcagatccaacaattacaagtggagcaagcaactttat 3053
>ref|XM_514310.1| PREDICTED: Pan troglodytes similar to RAC-gamma serine/threonine-protein kinase (RAC-PK-gamma) (Protein kinase Akt-3) (Protein kinase B, gamma) (PKB gamma) (LOC457863), mRNA Length = 1209 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 ttacgttatacaacaaatgtgg 43 |||||||||||||||||||||| Sbjct: 578 ttacgttatacaacaaatgtgg 599
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 atcgcagatccaacaatcgca 191 ||||||||||||||||||||| Sbjct: 12629121 atcgcagatccaacaatcgca 12629141
>emb|Z97205.1|HS155D22 Human DNA sequence from clone RP1-155D22 on chromosome 6q27 Contains a novel gene, complete sequence Length = 148851 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ccactcagccacaaaaaagaa 120 ||||||||||||||||||||| Sbjct: 90298 ccactcagccacaaaaaagaa 90318
>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0030D15, from chromosome 3, complete sequence Length = 151972 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 atcgcagatccaacaatcgca 191 ||||||||||||||||||||| Sbjct: 47868 atcgcagatccaacaatcgca 47848
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 atcgcagatccaacaatcgca 191 ||||||||||||||||||||| Sbjct: 12625884 atcgcagatccaacaatcgca 12625904
>emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chromosome 7, complete sequence Length = 186089 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 actcagccacaaaaaagaag 121 |||||||||||||||||||| Sbjct: 109871 actcagccacaaaaaagaag 109890
>emb|AL009194.1|DMC152A3 Drosophila melanogaster cosmid clone 152A3 Length = 24604 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccacctcactccccccact 104 |||||||||||||||||||| Sbjct: 23705 tccacctcactccccccact 23724
>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the 3' end of the Gabrb2 gene for subunit beta 2 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 195923 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 gactgcaaatatttctggaa 294 |||||||||||||||||||| Sbjct: 29207 gactgcaaatatttctggaa 29226
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccacctcactccccccactc 105 |||||||||||||||||||| Sbjct: 118510 ccacctcactccccccactc 118491
>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177724 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccacctcactccccccact 104 |||||||||||||||||||| Sbjct: 160551 tccacctcactccccccact 160570
>gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 193714 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccacctcactccccccact 104 |||||||||||||||||||| Sbjct: 19489 tccacctcactccccccact 19508
>gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, complete sequence Length = 158510 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gaacaatcaaggcaaaccaa 258 |||||||||||||||||||| Sbjct: 95736 gaacaatcaaggcaaaccaa 95755
>dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2523D13, complete sequences Length = 221091 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 actcagccacaaaaaagaag 121 |||||||||||||||||||| Sbjct: 169499 actcagccacaaaaaagaag 169518
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccacctcactccccccactc 105 |||||||||||||||||||| Sbjct: 12645052 ccacctcactccccccactc 12645071
>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete sequence Length = 292830 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tccacctcactccccccact 104 |||||||||||||||||||| Sbjct: 120230 tccacctcactccccccact 120249
>dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-215D10, complete sequence Length = 167376 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 actcagccacaaaaaagaag 121 |||||||||||||||||||| Sbjct: 46212 actcagccacaaaaaagaag 46231
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccacctcactccccccactc 105 |||||||||||||||||||| Sbjct: 12652392 ccacctcactccccccactc 12652411
>emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 in linkage group 20, complete sequence Length = 195087 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 caaatatttctggaactaaa 299 |||||||||||||||||||| Sbjct: 79614 caaatatttctggaactaaa 79595
>emb|AL671991.5| Mouse DNA sequence from clone RP23-343L7 on chromosome X, complete sequence Length = 211866 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 aaatatttctggaactaaag 300 |||||||||||||||||||| Sbjct: 196839 aaatatttctggaactaaag 196820 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,873,917 Number of Sequences: 3902068 Number of extensions: 2873917 Number of successful extensions: 46481 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46399 Number of HSP's gapped (non-prelim): 82 length of query: 366 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 344 effective length of database: 17,147,199,772 effective search space: 5898636721568 effective search space used: 5898636721568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)