ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55d04 |
|---|---|
| Clone Library Name | barley_pub |
>KCNKD_HUMAN (Q9HB14) Potassium channel subfamily K member 13 (Tandem pore| domain halothane-inhibited potassium channel 1) (THIK-1) Length = 408 Score = 30.8 bits (68), Expect = 0.80 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = -2 Query: 159 FALLIFCPMADVMVCCCNITYTNGDGGT*TVSLQSWSYLSML--CFIFYSLI 10 + +LI C + ++ CC + YT ++ WSY L CF+ +S I Sbjct: 196 YVMLILCTASILISCCASAMYT---------PIEGWSYFDSLYFCFVAFSTI 238
>MATK_TRIMC (Q9XPP1) Maturase K (Intron maturase)| Length = 517 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 318 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 354
>MATK_TRIGN (Q7JEV7) Maturase K (Intron maturase)| Length = 517 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 318 HFWSKPYRIHINPFSNYSFYFLGYISSVRINPSAVKN 354
>MATK_TRIUN (Q9XPP8) Maturase K (Intron maturase)| Length = 515 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 316 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 352
>MATK_TRIPU (Q9XPP4) Maturase K (Intron maturase)| Length = 515 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 316 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 352
>MATK_TRILU (Q9XPP0) Maturase K (Intron maturase)| Length = 515 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 316 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 352
>MATK_TRIFE (Q7JEV9) Maturase K (Intron maturase)| Length = 521 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 322 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 358
>MATK_TRIEE (Q7JEW0) Maturase K (Intron maturase)| Length = 521 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 322 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 358
>MATK_TRICT (Q7JEW7) Maturase K (Intron maturase)| Length = 521 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 322 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 358
>MATK_TRICE (Q7JEW6) Maturase K (Intron maturase)| Length = 521 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YRI+I S YSFYF + + + P KN Sbjct: 322 HFWSKPYRIHINPFSNYSFYFLGYISSVLINPSAVKN 358
>OLF6_MOUSE (P34986) Olfactory receptor 6 (Olfactory receptor 103-16) (Odorant| receptor M50) Length = 316 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -1 Query: 394 CWRLRFSIYKASGLCVRLAIGNKMS 320 CW LR+ + +G CV+L I + +S Sbjct: 125 CWPLRYPVMMTTGFCVQLTISSWVS 149
>KCNKC_RAT (Q9ERS1) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -2 Query: 153 LLIFCPMADVMVCCCNITYTNGDGGT*TVSLQSWSYLSML--CFIFYSLI 10 LLI A ++ CC + YT S++ W Y+ L CF+ +S I Sbjct: 217 LLILGLFAVLLACCASAMYT---------SVEGWDYVDSLYFCFVTFSTI 257
>MATK_LILTS (Q9GIG3) Maturase K (Intron maturase)| Length = 512 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YR++I YSFYF R+ + P KN Sbjct: 317 HFWSQPYRMHINSLLNYSFYFMGYLLRVLINPYAVKN 353
>MATK_LILSU (P68752) Maturase K (Intron maturase)| Length = 512 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YR++I YSFYF R+ + P KN Sbjct: 317 HFWSQPYRMHINSLLNYSFYFMGYLLRVLINPYAVKN 353
>MATK_LILMI (P68751) Maturase K (Intron maturase)| Length = 512 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YR++I YSFYF R+ + P KN Sbjct: 317 HFWSQPYRMHINSLLNYSFYFMGYLLRVLINPYAVKN 353
>MATK_LILLO (Q9B1U9) Maturase K (Intron maturase)| Length = 512 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YR++I YSFYF R+ + P KN Sbjct: 317 HFWSQPYRMHINSLLNYSFYFMGYLLRVLINPYAVKN 353
>MATK_LILCA (P68750) Maturase K (Intron maturase)| Length = 512 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 H +S YR++I YSFYF R+ + P KN Sbjct: 317 HFWSQPYRMHINSLLNYSFYFMGYLLRVLINPYAVKN 353
>MATK_HELBU (Q9XPN6) Maturase K (Intron maturase)| Length = 515 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +1 Query: 271 HLYSASYRIYILLGSYYSFYFRWQGARIALTPCRWKN 381 + +S YRI+I S YSFYF + + + P KN Sbjct: 316 YFWSKPYRIHINQLSNYSFYFMGYISSVLINPSAVKN 352
>KCNKC_HUMAN (Q9HB15) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -2 Query: 153 LLIFCPMADVMVCCCNITYTNGDGGT*TVSLQSWSYLSML--CFIFYSLI 10 LLI A ++ CC + YT S++ W Y+ L CF+ +S I Sbjct: 217 LLILGLFAVLLSCCASAMYT---------SVEGWDYVDSLYFCFVTFSTI 257
>LECT1_HUMAN (O75829) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)] Length = 334 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +1 Query: 277 YSASYRIYILLGSYYSFYFRWQGARIA---LTPCRW 375 Y+ +I LG YY + + +QG R A + PC W Sbjct: 290 YTHCQKICEPLGGYYPWPYNYQGCRSACRVIMPCSW 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,856,870 Number of Sequences: 219361 Number of extensions: 743509 Number of successful extensions: 1651 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1620 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1646 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
