ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC025284.4|AC025284 Homo sapiens chromosome 16 clone RP11-449J10, complete sequence Length = 164603 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 105 tgttacaacaacataccattacat 128 |||||||||||||||||||||||| Sbjct: 56039 tgttacaacaacataccattacat 56062
>emb|AL590143.4| Human DNA sequence from clone RP11-132M7 on chromosome 6 Contains two novel genes and a pseudogene similar to part of cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) (COX7A1) (COX7A COX7AM), complete sequence Length = 73070 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctctct 216 ||||||||||||||||||||||| Sbjct: 69844 ctttctctttcccctctctctct 69866
>gb|AC073066.5| Homo sapiens BAC clone RP11-149P12 from 2, complete sequence Length = 169286 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctctct 216 ||||||||||||||||||||||| Sbjct: 84438 ctttctctttcccctctctctct 84460
>emb|BX072567.11| Mouse DNA sequence from clone RP23-48P10 on chromosome X, complete sequence Length = 57561 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 133 cataggacagaaaattaaaaggg 155 ||||||||||||||||||||||| Sbjct: 6366 cataggacagaaaattaaaaggg 6388
>gb|AC162884.4| Mus musculus chromosome 5, clone RP24-169E23, complete sequence Length = 158942 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 ctttctctttcccctctctctc 215 |||||||||||||||||||||| Sbjct: 24484 ctttctctttcccctctctctc 24463
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/52 (86%), Gaps = 3/52 (5%) Strand = Plus / Plus Query: 183 acagctaacagctttctctttcccctctctctctagttctaaatttctacag 234 |||||||||||||||||| ||| ||| |||||||| |||||||| ||||| Sbjct: 15081 acagctaacagctttctcattctcct---tctctagtgctaaatttgtacag 15129
>gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, complete sequence Length = 185522 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctctc 215 |||||||||||||||||||||| Sbjct: 59439 ctttctctttcccctctctctc 59460
>gb|AC124401.3| Mus musculus BAC clone RP24-362C2 from chromosome 19, complete sequence Length = 138622 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctcta 217 ||||||||||||||||||||| Sbjct: 44479 tctctttcccctctctctcta 44499
>emb|AL663042.5| Mouse DNA sequence from clone RP23-400P12 on chromosome 11 Contains two NACHT, leucine rich repeat and PYD containing 1 (NALP1) pseudogenes, complete sequence Length = 153021 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 ctttctctttcccctctctctctag 218 |||||||| |||||||||||||||| Sbjct: 59516 ctttctctctcccctctctctctag 59492
>gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, complete sequence Length = 185255 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 ataaaatataaagcaaagcat 39 ||||||||||||||||||||| Sbjct: 156499 ataaaatataaagcaaagcat 156519
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ttctctttcccctctctctct 216 ||||||||||||||||||||| Sbjct: 22795143 ttctctttcccctctctctct 22795163
>emb|AL833805.11| Mouse DNA sequence from clone RP23-158L19 on chromosome X, complete sequence Length = 118691 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 tttctctttcccctctctctc 215 ||||||||||||||||||||| Sbjct: 31857 tttctctttcccctctctctc 31877
>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1116H04 Length = 140142 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ttctctttcccctctctctct 216 ||||||||||||||||||||| Sbjct: 121785 ttctctttcccctctctctct 121805
>emb|AL929248.12| Mouse DNA sequence from clone RP23-354I18 on chromosome 2, complete sequence Length = 101990 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tagctacagaatctacattct 305 ||||||||||||||||||||| Sbjct: 56141 tagctacagaatctacattct 56161
>emb|BX470255.18| Zebrafish DNA sequence from clone DKEY-76A14 in linkage group 1, complete sequence Length = 203708 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 284 ctagctacagaatctacattctcct 308 ||||||||| ||||||||||||||| Sbjct: 11413 ctagctacataatctacattctcct 11389
>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete sequence Length = 210984 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctct 214 ||||||||||||||||||||| Sbjct: 108518 ctttctctttcccctctctct 108538
>gb|AC151478.1| Mus musculus BAC clone RP23-83K12 from 19, complete sequence Length = 219132 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctcta 217 ||||||||||||||||||||| Sbjct: 31284 tctctttcccctctctctcta 31304
>emb|AL645600.11| Mouse DNA sequence from clone RP23-396N4 on chromosome 11, complete sequence Length = 180286 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctct 214 ||||||||||||||||||||| Sbjct: 48510 ctttctctttcccctctctct 48530
>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence Length = 197551 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 tctctttcccctctctctctagtt 220 ||||| |||||||||||||||||| Sbjct: 155048 tctctctcccctctctctctagtt 155025
>gb|AF005370.1| Alcelaphine herpesvirus 1 L-DNA, complete sequence Length = 130608 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ctttactcagctagctacag 293 |||||||||||||||||||| Sbjct: 29434 ctttactcagctagctacag 29415
>gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete sequence Length = 157383 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 tctttcccctctctctctagttct 222 ||||||||||||||||||| |||| Sbjct: 45426 tctttcccctctctctctatttct 45403
>gb|AC127306.3| Mus musculus BAC clone RP23-290H17 from chromosome 7, complete sequence Length = 204478 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 198224 tctctttcccctctctctct 198243
>gb|AC183321.1| Ornithorhynchus anatinus BAC clone OABb-153H21 from chromosome unknown, complete sequence Length = 161060 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctc 213 |||||||||||||||||||| Sbjct: 24856 ctttctctttcccctctctc 24875
>gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, complete sequence Length = 177979 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 acagaaaattaaaagggcaa 158 |||||||||||||||||||| Sbjct: 30709 acagaaaattaaaagggcaa 30690
>gb|AC135860.4| Mus musculus BAC clone RP24-441J10 from chromosome 7, complete sequence Length = 196609 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 47550 tctctttcccctctctctct 47569
>gb|AY498860.1| Homo sapiens tumor necrosis factor receptor superfamily, member 8 (TNFRSF8) gene, complete cds Length = 84102 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctc 213 |||||||||||||||||||| Sbjct: 64485 ctttctctttcccctctctc 64504
>gb|AC144868.2| Xenopus tropicalis clone ISB-379D13, complete sequence Length = 63594 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 tctttcccctctctctctagttct 222 ||||||||||||||||||| |||| Sbjct: 37385 tctttcccctctctctctatttct 37362
>gb|DQ443475.1| Camellia sinensis clone Qiannianxue tea leaf mutant color tag S17.B10 genomic sequence Length = 720 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tctttcccctctctctctag 218 |||||||||||||||||||| Sbjct: 110 tctttcccctctctctctag 91
>gb|AC163637.4| Mus musculus BAC clone RP23-186O3 from chromosome 9, complete sequence Length = 215370 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 agctttctctttcccctctc 211 |||||||||||||||||||| Sbjct: 167923 agctttctctttcccctctc 167904
>emb|BX248419.4| Human DNA sequence from clone DASS-254G14 on chromosome 6, complete sequence Length = 122321 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 68423 gccataggacagaaaattaa 68442
>emb|AL844220.3| Human DNA sequence from clone DAQB-44E15 on chromosome 6 Contains the TRIM10 gene for tripartite motif-containing 10, the TRIM15 gene for tripartite motif-containing 15, the TRIM26 gene for tripartite motif-containing 26, the PAIP1P1 pseudogene for poly(A) binding protein interacting protein 1 pseudogene 1, the HCG17 gene for HLA complex group 17, the TRIM26P pseudogene for tripartite motif-containing 26, the HLA-L pseudogene for major histocompatibility complex, class I, L, the 3' end of the HCG18 gene for HLA complex group 18 and 3 CpG islands, complete sequence Length = 152298 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 84441 gccataggacagaaaattaa 84460
>emb|AL662832.5| Human DNA sequence from clone XXbac-141O14 on chromosome 6 contains the 5' end of the TRIM26 gene for tripartite motif containing 26, two putative novel transcript, a tripartite motif containing 26 (TRIM26) pseudogene, a MHC class 1 pseudogene, the TRIM39 gene for tripartite motif containing 39, the RPP21 gene for ribonuclease p subunit and four CpG islands, complete sequence Length = 161348 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 43933 gccataggacagaaaattaa 43952
>emb|AL662782.3| Human DNA sequence from clone XXbac-252N6 on chromosome 6 contains a putative novel transcript, a tripartite motif containing 26 (TRIM26) pseudogene, a MHC class 1 pseudogene and two CpG islands, complete sequence Length = 62456 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 27223 gccataggacagaaaattaa 27242
>emb|AL590632.5| Human DNA sequence from clone RP11-52I18 on chromosome 1 Contains a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) pseudogene and part of a novel gene, complete sequence Length = 82329 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 199 tctttcccctctctctctagttctaaatttct 230 |||||||||||||||||| || ||||||||| Sbjct: 37200 tctttcccctctctctctttttttaaatttct 37231
>emb|AL583854.7| Human DNA sequence from clone RP11-570K4 on chromosome 6 Contains part of a novel gene, complete sequence Length = 135953 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ttgtagatggaaaaacggag 385 |||||||||||||||||||| Sbjct: 10814 ttgtagatggaaaaacggag 10795
>emb|AL357835.11| Human DNA sequence from clone RP11-426M1 on chromosome 1 Contains the TNFRSF8 gene for tumor necrosis factor receptor superfamily member 8, a ribosomal protein L23a (RPL23A) pseudogene, the 5' end of the TNFRSF1B gene for tumor necrosis factor receptor superfamily member 1B and three CpG islands, complete sequence Length = 151498 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctc 213 |||||||||||||||||||| Sbjct: 80104 ctttctctttcccctctctc 80123
>gb|AC144820.2| Xenopus tropicalis clone ISB-286C6, complete sequence Length = 103933 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 tctttcccctctctctctagttct 222 ||||||||||||||||||| |||| Sbjct: 78696 tctttcccctctctctctatttct 78673
>gb|AC098690.3| Homo sapiens chromosome 1 clone RP11-507I14, complete sequence Length = 128000 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 71069 tctctttcccctctctctct 71088
>emb|AL354712.18| Human DNA sequence from clone RP4-597A16 on chromosome 1p36.13-36.23 Contains the 5' end of a novel leucine rich repeat domain containing protein, a novel gene, a pseudogene similar to part of WD repeat domain, the 5' end of the gene for lung type-I cell membrane-associated glycoprotein (T1A-2) and a CpG island, complete sequence Length = 123288 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 84656 tctctttcccctctctctct 84637 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 84612 tctctttcccctctctctct 84593 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 84568 tctctttcccctctctctct 84549 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 84524 tctctttcccctctctctct 84505 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 84480 tctctttcccctctctctct 84461
>gb|AC093563.3| Homo sapiens chromosome 1 clone RP4-648I13, complete sequence Length = 163579 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 123982 tctctttcccctctctctct 124001
>emb|AL133476.17| Human DNA sequence from clone RP11-156G14 on chromosome 9p13.1-13.3 Contains the 3' end of a novel gene, a protein associated with PRK1 (AWP1) pseudogene, a novel gene (KIAA0375), a ribosomal protein L36a (L44L, RPL44) (RPL36A) pseudogene, a novel gene, a ribosomal protein S29 (RPS29) pseudogene and a CpG island, complete sequence Length = 153826 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 20441 tctctttcccctctctctct 20460 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 20373 tctctttcccctctctctct 20392 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 20328 tctctttcccctctctctct 20347
>emb|AL023581.1|HS45I4 Human DNA sequence from clone RP1-45I4 on chromosome 6q24.1-24.3 Contains part of a novel gene (FLJ32928), two novel genes, and the 5' end of the gene for androgen induced protein (AIG-1, CGI-103) (includes FLJ10485). Contains a CpG island, complete sequence Length = 137947 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 85669 tctctttcccctctctctct 85688
>gb|AC159210.2| Mus musculus BAC clone RP23-54F9 from chromosome 13, complete sequence Length = 228429 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 178457 tctctttcccctctctctct 178438
>emb|AL772163.7| Zebrafish DNA sequence from clone CH211-156N3 in linkage group 5 Contains a gene for a novel protein with ATPase domain, complete sequence Length = 180048 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 aacagctttctctttcccct 208 |||||||||||||||||||| Sbjct: 55564 aacagctttctctttcccct 55583
>emb|CR388382.5| Human DNA sequence from clone DADB-23P23 on chromosome 6, complete sequence Length = 109067 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 72235 gccataggacagaaaattaa 72254
>emb|CR381598.5| Zebrafish DNA sequence from clone CH211-263K4 in linkage group 8, complete sequence Length = 146900 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ctttctctttcccctctctc 213 |||||||||||||||||||| Sbjct: 143229 ctttctctttcccctctctc 143210
>emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in linkage group 7, complete sequence Length = 163069 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 taaaatataaagcaaagcat 39 |||||||||||||||||||| Sbjct: 25311 taaaatataaagcaaagcat 25330
>gb|AC087224.13| Homo sapiens chromosome 18, clone RP11-52C21, complete sequence Length = 156222 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 119309 tctctttcccctctctctct 119328
>gb|AC112178.2| Homo sapiens chromosome 5 clone RP11-114H21, complete sequence Length = 159853 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 147499 tctctttcccctctctctct 147480
>gb|AC007294.8| Arabidopsis thaliana chromosome 2 clone T26C18 map PR1, complete sequence Length = 24978 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 2803 tctctttcccctctctctct 2784
>gb|AC110721.1| Homo sapiens chromosome 5 clone RP11-520E18, complete sequence Length = 164525 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 149919 tctctttcccctctctctct 149938
>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence Length = 210913 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 85517 tctctttcccctctctctct 85536
>gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, complete sequence Length = 160726 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 agctacagaatctacattctcctc 309 ||||||||||| |||||||||||| Sbjct: 92434 agctacagaatatacattctcctc 92457
>gb|AC008628.6| Homo sapiens chromosome 5 clone CTB-161J7, complete sequence Length = 95908 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ctcattctccacatctttactcag 283 ||||||||||||| |||||||||| Sbjct: 17264 ctcattctccacacctttactcag 17287
>gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, complete sequence Length = 211632 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctctcta 217 |||||||| ||||||||||||||| Sbjct: 86260 ctttctctctcccctctctctcta 86283
>gb|AC019187.3|AC019187 Homo sapiens BAC clone RP11-304J20 from 1, complete sequence Length = 174673 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 20701 tctctttcccctctctctct 20682
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 5244255 tctctttcccctctctctct 5244236
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 3653093 tctctttcccctctctctct 3653074
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ttctctttcccctctctctc 215 |||||||||||||||||||| Sbjct: 22649872 ttctctttcccctctctctc 22649891
>gb|AC126182.2| Homo sapiens 3 BAC RP11-359H3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196944 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 24492 tctctttcccctctctctct 24473
>gb|AC007185.12|AC007185 Drosophila melanogaster, chromosome 2L, region 36A-, BAC clone BACR44N04, complete sequence Length = 190651 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ataaaatataaagcaaagca 38 |||||||||||||||||||| Sbjct: 113082 ataaaatataaagcaaagca 113101
>emb|BX927189.6| Human DNA sequence from clone DAMA-83L10 on chromosome 6, complete sequence Length = 124330 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 39858 gccataggacagaaaattaa 39877
>gb|AC110073.3| Homo sapiens BAC clone RP11-62A4 from 4, complete sequence Length = 130088 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 123569 tctctttcccctctctctct 123588
>emb|BX005327.9| Zebrafish DNA sequence from clone DKEY-65B16 in linkage group 7, complete sequence Length = 237129 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 taaaatataaagcaaagcat 39 |||||||||||||||||||| Sbjct: 30747 taaaatataaagcaaagcat 30728
>gb|AC154633.2| Mus musculus BAC clone RP23-296I10 from chromosome 12, complete sequence Length = 216169 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 107897 tctctttcccctctctctct 107878
>gb|AC155236.2| Mus musculus BAC clone RP24-427K17 from chromosome 12, complete sequence Length = 126917 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 61744 tctctttcccctctctctct 61725
>gb|AC092469.10| Homo sapiens 12 BAC RP11-440E12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104395 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 agctacagaatctacattctcctc 309 ||||||||||| |||||||||||| Sbjct: 31158 agctacagaatatacattctcctc 31135
>gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, complete sequence Length = 193302 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctctcta 217 |||||||| ||||||||||||||| Sbjct: 148388 ctttctctctcccctctctctcta 148411
>gb|AC119914.10| Mus musculus chromosome 15, clone RP24-244H15, complete sequence Length = 213223 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 ttcagtctcaggtaggttacagct 188 ||||||||||||||| |||||||| Sbjct: 64351 ttcagtctcaggtagattacagct 64328
>gb|AC009289.8|AC009289 Homo sapiens, clone RP11-44J3, complete sequence Length = 146010 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 79448 tctctttcccctctctctct 79429
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 1708757 gccataggacagaaaattaa 1708738
>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15 Length = 158821 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 47321 tctctttcccctctctctct 47302
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 1251236 gccataggacagaaaattaa 1251217
>dbj|AP005739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0012A04 Length = 150317 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 40968 tctctttcccctctctctct 40949
>dbj|AP006155.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G04 Length = 144644 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 79195 tctctttcccctctctctct 79176
>emb|BX088703.5| Zebrafish DNA sequence from clone CH211-241D14 in linkage group 17, complete sequence Length = 87046 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ctctctctctagttctaaat 226 |||||||||||||||||||| Sbjct: 80061 ctctctctctagttctaaat 80080
>dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, map 22, complete sequences Length = 165662 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 57835 tctctttcccctctctctct 57854
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ttctctttcccctctctctc 215 |||||||||||||||||||| Sbjct: 97683 ttctctttcccctctctctc 97702
>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046O12 Length = 128223 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ttctctttcccctctctctc 215 |||||||||||||||||||| Sbjct: 8668 ttctctttcccctctctctc 8687
>gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, complete sequence Length = 252791 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctc 213 |||||||||||||||||||| Sbjct: 172532 ctttctctttcccctctctc 172551
>emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in linkage group 7, complete sequence Length = 190715 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 taaaatataaagcaaagcat 39 |||||||||||||||||||| Sbjct: 167225 taaaatataaagcaaagcat 167206
>emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chromosome X, complete sequence Length = 221920 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 38191 tctctttcccctctctctct 38210
>gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60 of 83 of the complete sequence Length = 254646 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ataaaatataaagcaaagca 38 |||||||||||||||||||| Sbjct: 209459 ataaaatataaagcaaagca 209478
>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence Length = 178509 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 101719 tctctttcccctctctctct 101700
>gb|AC159104.2| Mus musculus BAC clone RP23-246E2 from chromosome 13, complete sequence Length = 203694 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 129011 tctctttcccctctctctct 129030
>emb|AL935029.6| Zebrafish DNA sequence from clone CH211-168J20 in linkage group 1, complete sequence Length = 157435 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 taaaatataaagcaaagcat 39 |||||||||||||||||||| Sbjct: 130204 taaaatataaagcaaagcat 130223
>gb|AC166074.3| Mus musculus BAC clone RP23-152H18 from chromosome 13, complete sequence Length = 224712 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 215299 tctctttcccctctctctct 215318
>emb|CT009520.5| Human DNA sequence from clone DAAP-384I23 on chromosome 6, complete sequence Length = 30615 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 20413 gccataggacagaaaattaa 20432
>emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in linkage group 15, complete sequence Length = 107420 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 1987 tctctttcccctctctctct 1968
>gb|AC004191.1|AC004191 Homo sapiens clone UWGC:y18c296 from 6p21, complete sequence Length = 45601 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 34659 gccataggacagaaaattaa 34640
>emb|AL844491.14| Mouse DNA sequence from clone RP23-173A8 on chromosome 11, complete sequence Length = 180637 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ttctctttcccctctctctc 215 |||||||||||||||||||| Sbjct: 139227 ttctctttcccctctctctc 139246
>emb|BX000443.5| Zebrafish DNA sequence from clone DKEY-5K18 in linkage group 17, complete sequence Length = 193168 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ctctctctctagttctaaat 226 |||||||||||||||||||| Sbjct: 134499 ctctctctctagttctaaat 134480
>emb|CT025623.13| Mouse DNA sequence from clone RP23-397E11 on chromosome 12, complete sequence Length = 205791 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tctctttcccctctctctct 216 |||||||||||||||||||| Sbjct: 13887 tctctttcccctctctctct 13868
>emb|AJ289159.1|HSA289159 Homo sapiens CD30 gene for cytokine receptor CD30, exons 1-8 Length = 24538 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctttctctttcccctctctc 213 |||||||||||||||||||| Sbjct: 12531 ctttctctttcccctctctc 12550
>dbj|AB023055.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:904J21, complete sequence Length = 162383 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 2178 gccataggacagaaaattaa 2159
>dbj|AB023054.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:679G22, complete sequence Length = 162383 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gccataggacagaaaattaa 150 |||||||||||||||||||| Sbjct: 2178 gccataggacagaaaattaa 2159 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,313,025 Number of Sequences: 3902068 Number of extensions: 5313025 Number of successful extensions: 117210 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 116745 Number of HSP's gapped (non-prelim): 466 length of query: 406 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 384 effective length of database: 17,147,199,772 effective search space: 6584524712448 effective search space used: 6584524712448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
