ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55c12 |
|---|---|
| Clone Library Name | barley_pub |
>OXAA_PROMA (Q7VB00) Inner membrane protein oxaA| Length = 382 Score = 30.8 bits (68), Expect = 0.90 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Frame = -2 Query: 306 STLKGYFPS*RFGVKDGALFL*AVGSLGF-------WALPCILVPAWHTVFCTLQV*NKY 148 +T++G P K G LF+ A+G +GF W + ++ T+ + + + Sbjct: 230 ATVEGKIPG--LAAKSGFLFIKALGQVGFYVDGAINWDIAILVAGFGLTLVISQVLSGQG 287 Query: 147 RPPFHWFSFQPEDTHVQ*NTPVNFTSLY*ITPIPSASLAFHI 22 PP P+ Q TP+ T ++ P+P+ L + + Sbjct: 288 MPP------NPQQATAQKITPIMITGMFLFFPLPAGVLLYMV 323
>PAL1_DAUCA (O23865) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)| Length = 708 Score = 30.0 bits (66), Expect = 1.5 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -3 Query: 191 LGIPFSAHYRC--KINTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYE 18 LG P + H + + N D++S GL+SSRKT + +I L ++ + L QA R + E Sbjct: 464 LGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEI-LKLMSTTFLVGLCQAVDLRHLEE 522 Query: 17 NLVVT 3 NL T Sbjct: 523 NLKST 527
>PALY_STYHU (P45732) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 715 Score = 29.6 bits (65), Expect = 2.0 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Frame = -3 Query: 191 LGIPFSAHYRC--KINTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYE 18 L P ++H + + N D++S GL+S+RKT + +I L ++ P + L QA R + E Sbjct: 471 LANPVTSHVQSAEQHNQDVNSLGLISARKTNEAVEI-LKLMSPTYLIALCQAIDLRHLEE 529 Query: 17 NL 12 NL Sbjct: 530 NL 531
>PAL1_LITER (O49835) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL-1)| Length = 710 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L+QA R I EN+ Sbjct: 481 NQDVNSLGLISSRKTSEAVEI-LKLMSSSFLVALFQAVDLRHIEENV 526
>PAL2_CICAR (Q9SMK9) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)| Length = 718 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L QA R I ENL Sbjct: 489 NQDVNSLGLISSRKTAEAVEI-LKLMSSTFLVALCQAIDLRHIEENL 534
>PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 710 Score = 28.9 bits (63), Expect = 3.4 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = -3 Query: 191 LGIPFSAHYRC--KINTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYE 18 LG P + H + + N D++S GL+SSRKT + I L ++ + L QA R I E Sbjct: 468 LGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDI-LKLMSSTFLIALCQAVDLRHIEE 526 Query: 17 NL 12 N+ Sbjct: 527 NV 528
>PRLC2_MOUSE (Q9CQ58) Placental prolactin-like protein C2 precursor (PRL-like| protein C2) (PLP-C2) (Prolactin-like protein C-beta) (PLP C-beta) Length = 241 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = +2 Query: 128 NQWNGGLYLFYTCNV---QKTVCQAGTKIHGKAQNPSE 232 NQ++ G +L + N+ +TV +AGT H NP + Sbjct: 73 NQFSSGQFLIFNSNLIRRDETVARAGTYCHSTLSNPPD 110
>PAL2_PEA (Q04593) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)| Length = 724 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L QA R + ENL Sbjct: 495 NQDVNSLGLISSRKTYEAIEI-LQLMSSTFLIALCQAIDLRHLEENL 540
>PAL1_PEA (Q01861) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)| Length = 723 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L QA R + ENL Sbjct: 494 NQDVNSLGLISSRKTYEAIEI-LQLMSSTFLIALCQAVDLRHLEENL 539
>PALY_PERAE (P45727) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 620 Score = 28.5 bits (62), Expect = 4.5 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENLVVT 3 N D++S GL+SSRKT + +I L ++ + L QA R + ENL T Sbjct: 391 NQDVNSLGLISSRKTAEAVEI-LKLMSSTFLVGLCQAIDLRHLEENLKST 439
>PAL3_PETCR (P45729) Phenylalanine ammonia-lyase 3 (EC 4.3.1.5)| Length = 718 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENLVVT 3 N D++S GL+SSRKT + +I L ++ + L QA R + ENL T Sbjct: 489 NQDVNSLGLISSRKTSEAVEI-LKLMSTTFLVGLCQAIDLRHLEENLKST 537
>PAL2_PETCR (P45728) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)| Length = 716 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENLVVT 3 N D++S GL+SSRKT + +I L ++ + L QA R + ENL T Sbjct: 487 NQDVNSLGLISSRKTSEAVEI-LKLMSTTFLVGLCQAIDLRHLEENLKST 535
>PAL1_PETCR (P24481) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)| Length = 716 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENLVVT 3 N D++S GL+SSRKT + +I L ++ + L QA R + ENL T Sbjct: 487 NQDVNSLGLISSRKTSEAVEI-LKLMSTTFLVGLCQAIDLRHLEENLKST 535
>PAL1_IPOBA (P14166) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 707 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+S+RKT + + L ++ + L QA RF+ ENL Sbjct: 478 NQDVNSLGLISARKTAEAVDV-LKLMSSTYLVALCQAIDLRFLEENL 523
>PALY_TRISU (P45734) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 725 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L QA R + ENL Sbjct: 496 NQDVNSLGLISSRKTKEAIEI-LQLMSSTFLIALCQAIDLRHLEENL 541
>PAL1_POPKI (P45731) Phenylalanine ammonia-lyase G1 (EC 4.3.1.5)| Length = 682 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + I L ++ + L QA R I ENL Sbjct: 453 NQDVNSLGLISSRKTAEAVDI-LKLMSTTFLVGLCQAVDLRHIEENL 498
>PALY_DIGLA (O23924) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 713 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT+ + I L ++ + L QA R + ENL Sbjct: 484 NQDVNSLGLISSRKTVEALDI-LKLMSSTYLVALCQAIDLRHLEENL 529
>PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)| Length = 713 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L QA R + ENL Sbjct: 484 NQDVNSLGLISSRKTNEAIEI-LKLMSSTFLIALCQAIDLRHLEENL 529
>PALY_WHEAT (Q43210) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 700 Score = 27.7 bits (60), Expect = 7.6 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = -3 Query: 191 LGIPFSAHYRC--KINTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYE 18 LG P + H + + N D++S GL+SSRKT + I L ++ + L QA R + E Sbjct: 456 LGNPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDI-LKLMSSTFLVALCQAIDLRHLEE 514 Query: 17 NL 12 N+ Sbjct: 515 NV 516
>PAL2_PHAVU (P19142) Phenylalanine ammonia-lyase class 2 (EC 4.3.1.5)| (Phenylalanine ammonia-lyase class II) Length = 712 Score = 27.7 bits (60), Expect = 7.6 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = -3 Query: 191 LGIPFSAHYRC--KINTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYE 18 L P ++H + + N D++S GL+SSRKT + +I L ++ + L QA R + E Sbjct: 468 LANPVTSHVQSAEQHNQDVNSLGLISSRKTNEALEI-LKLMSSTFLVALCQAIDLRHLEE 526 Query: 17 NL 12 NL Sbjct: 527 NL 528
>HIS1_BUCBP (P59453) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 299 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = -3 Query: 293 DTFLVEDLV*RMVL---CSYEQ*ARWDFGLCRVFWSLLGIPFSAHY 165 + L E+++ R V CSY + R DFG+CR+ L +P + Y Sbjct: 74 ENVLEEEVLNRQVQLDNCSYTKLKRLDFGICRL---SLAVPINIEY 116
>PALY_VITVI (P45735) Phenylalanine ammonia-lyase (EC 4.3.1.5) (Fragment)| Length = 416 Score = 27.3 bits (59), Expect = 10.0 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENLVVT 3 N D++S GL+SSRKT + I L ++ + L QA R + ENL T Sbjct: 187 NQDVNSLGLISSRKTAEAVDI-LKLMSTTYLVALCQAIDLRHLEENLKST 235
>ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3)| Length = 738 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -1 Query: 112 RHSCPVKYTCKFYIPVLNYTY-TKRILSVS 26 RH PV+YT +PV+N + T R + +S Sbjct: 198 RHQHPVEYTVPIQLPVINQVFGTSRAVKIS 227
>PALY_POPTR (P45730) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 715 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + I L ++ + L QA R + ENL Sbjct: 486 NQDVNSLGLISSRKTAEAVDI-LKLMSTTFLVALCQAIDLRHLEENL 531
>OPSD_BRARE (P35359) Rhodopsin| Length = 354 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = -2 Query: 306 STLKGYFPS*RFGVKDGALFL*AVGSLGFWALPCILVPAWHTV 178 ++L GYF R G F G +G W+L + + W V Sbjct: 97 TSLHGYFVFGRLGCNLEGFFATLGGEMGLWSLVVLAIERWMVV 139
>PAL1_RUBID (Q9M568) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (RiPAL1)| Length = 710 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENLVV 6 N D++S GL+SSRKT + I L ++ + L QA R + ENL + Sbjct: 481 NQDVNSLGLISSRKTSEAVDI-LKLMSSTFLVALCQAIDLRHLEENLKI 528
>PAL2_LITER (O49836) Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) (PAL-2)| Length = 705 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + +I L ++ + L QA R I EN+ Sbjct: 476 NQDVNSLGLISSRKTSEAVEI-LKLMSSSFLVALCQAVDLRHIEENV 521
>PAL1_PRUAV (O64963) Phenylalanine ammonia-lyase 1 (EC 4.3.1.5)| Length = 717 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + I L ++ + L QA R + ENL Sbjct: 488 NQDVNSLGLISSRKTAEAVDI-LKLMSSTFLVALCQAIDLRHLEENL 533
>PALY_BROFI (Q42609) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 703 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 152 NTDLHSTGLVSSRKTLMSSKIHL*ILHPCIKLHLYQAHP*RFIYENL 12 N D++S GL+SSRKT + I L ++ + L QA R + ENL Sbjct: 475 NQDVNSLGLISSRKTAEAVDI-LKLMSTTFLVGLCQAVDLRHLEENL 520 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,961,925 Number of Sequences: 219361 Number of extensions: 1092440 Number of successful extensions: 2449 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2448 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
