ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55c11 |
|---|---|
| Clone Library Name | barley_pub |
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 35.0 bits (79), Expect = 0.046 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -1 Query: 328 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEADHLADP 206 + +QG +F + G W F+V HFS YG +++ + P Sbjct: 855 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHP 895
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 35.0 bits (79), Expect = 0.046 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -1 Query: 328 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEADHLADP 206 + +QG +F + G W F+V HFS YG +++ + P Sbjct: 856 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHP 896
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 30.8 bits (68), Expect = 0.87 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 310 EFISFDGAKGEWKFRVKHFSSYGFGEAEAD 221 EFI F+ G+W F+V+HFS YG + E + Sbjct: 918 EFIDFND--GKWIFKVQHFSRYGLLDDEEE 945
>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +1 Query: 49 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRGVTNHPKEAAITTPIDKATRDQP 216 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +1 Query: 49 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRGVTNHPKEAAITTPIDKATRDQP 216 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficiency virus type I| enhancer-binding protein 1) (HIV-EP1) (Major histocompatibility complex-binding protein 1) (MBP-1) (Positive regulatory domain II-binding factor 1) (PRDII-BF1) Length = 2717 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +2 Query: 26 KKICTEKHGKELIAAFREQKHHNQYSPRPDQLHRPKLH-RIEGS-------PIIQKRQQL 181 K C+E HG + A RE +H SP P L LH R+ GS P I+KR+++ Sbjct: 978 KFYCSELHGPKTKVAMREPEH----SPVPGGLQPQILHYRVAGSSGIWEQTPQIRKRRKM 1033 Query: 182 Q 184 + Sbjct: 1034 K 1034
>SENP1_HUMAN (Q9P0U3) Sentrin-specific protease 1 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP1) Length = 643 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +1 Query: 4 TFGHSSMKKDMYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRGVTNH 162 TFG S+ +R + + SS+Q+++ S+ ++ +TR +S + G +NH Sbjct: 89 TFGQSA--NGQWRNSTPSSSSSLQKSRNSRSLYLETRKTSSGLSNSFAGKSNH 139
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/58 (25%), Positives = 29/58 (50%) Frame = +1 Query: 34 MYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRGVTNHPKEAAITTPIDKATR 207 ++R+T + S RT+ + + S+ R S ++T R NH E+ + P ++ R Sbjct: 90 LFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLR 147
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 4.3 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 207 PCSFIDRCCNCCL 169 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 4.3 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 207 PCSFIDRCCNCCL 169 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 4.3 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 207 PCSFIDRCCNCCL 169 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed| message 1 protein) (Castration-induced prostatic apoptosis-related protein 1) (CIPAR-1) Length = 296 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +1 Query: 46 TWEGTHSSIQRTKASQPIFSQTRSAT---STKAT*NRGVTNHPKEAAITTP 189 TW T S+ A+ P+ S T +A+ +T A+ + HP+E A+T+P Sbjct: 41 TW--TTSAQHTAMATTPVASATHNASVLRTTAASLTSQLPTHPREEAVTSP 89
>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1156 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -2 Query: 345 RCW*RRLRNREWSLSRLMAPRASGSSE*STSAPTGLVKPKPTTWLI 208 R + R + N W+L + R + S S SAPTGL K TT L+ Sbjct: 72 RIFKRVIGNEPWNLQKYWIKRLAKSESFSLSAPTGL--GKTTTLLV 115
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 313 VEFISFDGAKGEWKFRVKHFSSYGFGEAE 227 + +IS++ G W F+V HFS +G E Sbjct: 586 MNYISYNPFGGTWTFKVNHFSIWGLVNEE 614
>RL1_TROWT (P66099) 50S ribosomal protein L1| Length = 227 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 145 RGVTNHPKEAAITTPIDKATRDQPGGRL 228 RG+ +PK +T + KA +D GGR+ Sbjct: 134 RGLMPNPKTGTVTADVGKAVKDALGGRI 161
>RL1_TROW8 (P66100) 50S ribosomal protein L1| Length = 227 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 145 RGVTNHPKEAAITTPIDKATRDQPGGRL 228 RG+ +PK +T + KA +D GGR+ Sbjct: 134 RGLMPNPKTGTVTADVGKAVKDALGGRI 161
>ROK1_ASPFU (Q4WRH5) ATP-dependent RNA helicase rok1 (EC 3.6.1.-)| Length = 739 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/75 (24%), Positives = 31/75 (41%) Frame = +2 Query: 74 REQKHHNQYSPRPDQLHRPKLHRIEGSPIIQKRQQLQHLSIKLQGISQVVGFGFTKPVGA 253 ++ K + +P + + K R+ P++ ++ I + + GFT P Sbjct: 159 KKTKQQEESTPALTKKEQKKARRVYPQPLVSFKELRTRYKISRRLAENIAEQGFTVP--T 216 Query: 254 EVLHSELPLALGAIK 298 EV LPL LG K Sbjct: 217 EVQLGTLPLLLGGFK 231
>NCAP_CVM2 (Q9PY96) Nucleocapsid protein (N structural protein) (NC)| Length = 451 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +1 Query: 55 GTHSSIQRTKASQPIFSQTRSATSTKAT*NRGVTNHPKEAAITTP 189 G+ SS +A I +T A T+ NRG NHPK+ A T P Sbjct: 11 GSRSS-SGNRAGNGILKKTTWADQTERG-NRGRRNHPKQTATTQP 53
>RL1_NOCFA (Q5YPC5) 50S ribosomal protein L1| Length = 237 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 145 RGVTNHPKEAAITTPIDKATRDQPGGRL 228 RG+ +PK +TT + KA D GG++ Sbjct: 134 RGLMPNPKTGTVTTDVAKAVSDIKGGKI 161
>VTDB_RAT (P04276) Vitamin D-binding protein precursor (DBP) (Group-specific| component) (Gc-globulin) (VDB) Length = 476 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%) Frame = -1 Query: 79 FSECCYEFLPM--FFCTY 32 F ECCYE PM F C+Y Sbjct: 296 FEECCYETTPMGIFMCSY 313
>CXI7_CONRA (Q7Z095) I-superfamily conotoxin R11.7| Length = 46 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -2 Query: 207 PCSFIDRCCNCCL 169 PC + CCNCCL Sbjct: 11 PCEYHSDCCNCCL 23
>METE_RALSO (Q8XS05) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 776 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +2 Query: 38 TEKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIE 148 T + EL+ AF E + N+ P +H P++ R+E Sbjct: 667 TSRSNMELLDAFGEFAYPNEIGPGVYDIHSPRVPRVE 703
>SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 98 YSPRPDQLHRPKLHRIEGSPIIQKRQQLQHL 190 Y DQ H P H++EG +I K L HL Sbjct: 210 YRSDSDQTHTPMFHQVEGL-VIDKSSHLGHL 239
>METE_BUCBP (Q89B24) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 756 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +2 Query: 38 TEKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIEGSPIIQKRQQLQHLSIK 199 T + EL+ F+E K+ N P +H P + IE + RQ + ++ +K Sbjct: 668 TSRSDMELLEFFKEFKYPNDIGPGVYDIHSPNIPSIEWIMTL-LRQAMHYIPVK 720
>CNGB1_HUMAN (Q14028) Cyclic nucleotide-gated cation channel 4 (CNG channel 4)| (CNG-4) (CNG4) (Cyclic nucleotide-gated cation channel modulatory subunit) Length = 909 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +1 Query: 70 IQRTKASQPIFSQTRSATSTKAT*NRGVTNHPKEAAITTPIDKATRDQPG 219 +++ K+SQ + + SA + T HPKEAA P + + PG Sbjct: 810 VEQAKSSQDVKGEEGSAAPDQHT-------HPKEAATDPPAPRTPPEPPG 852
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 61 EFLPMFFCTYLFSLKNA 11 EF+P FF LF+LKNA Sbjct: 148 EFIPYFFLNQLFNLKNA 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,292,456 Number of Sequences: 219361 Number of extensions: 1057040 Number of successful extensions: 3398 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3323 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
