ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 246 2e-62
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 2e-06
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.033
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.033
5emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.51
6emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.51
7ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.0
8gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosom... 38 7.9
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.9
10gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 7.9
11emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 7.9
12emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 7.9
13gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.9
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
15gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 7.9
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
17gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.9
18gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 7.9
19gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporte... 38 7.9
20dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
21dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.9
22gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, comple... 38 7.9
23emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 7.9
24gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial p... 38 7.9
25gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial p... 38 7.9
26gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 38 7.9
27gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporte... 38 7.9
28gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporte... 38 7.9

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  246 bits (124), Expect = 2e-62
 Identities = 137/141 (97%), Gaps = 4/141 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 88   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 143
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                 
Query: 144  cttaattattcatgcaccggc 164
            |||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggc 2756



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 21   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 70
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 103  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 147
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 135    ccttattgccttaattattcatg 157
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.033
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 135   ccttattgccttaattattcatg 157
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 135      ccttattgccttaattattcatg 157
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.033
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 135      ccttattgccttaattattcatg 157
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    aaacaagggattttttctgca 62
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    gcaaaacaagggattttttct 59
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    ggagggaacatcacaccatc 24
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



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>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence
          Length = 182827

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 138   tattgccttaattattcat 156
             |||||||||||||||||||
Sbjct: 27354 tattgccttaattattcat 27336



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 36      tgggcaaaacaagggattt 54
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    ccagctgagctgagcttcc 104
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     gcaaaacaagggatttttt 57
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    gcaaaacaagggatttttt 57
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     tgggcaaaacaagggattt 54
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 13       catcacaccatcgacttcattat 35
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    agctgagctgagcttccgc 106
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 36      tgggcaaaacaagggattt 54
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    tgggcaaaacaagggattt 54
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 88     agctgagctgagcttccgc 106
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   ggaacatcacaccatcgac 27
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 13    catcacaccatcgacttcattat 35
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   tgggcaaaacaagggattt 54
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



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>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence
          Length = 228343

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   tattgccttaattattcat 156
             |||||||||||||||||||
Sbjct: 35076 tattgccttaattattcat 35094



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     gcaaaacaagggatttttt 57
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



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>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B
           mRNA, complete cds
          Length = 681

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  ccatcgacttcattattgg 38
           |||||||||||||||||||
Sbjct: 271 ccatcgacttcattattgg 253



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>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A
           mRNA, complete cds
          Length = 692

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  ccatcgacttcattattgg 38
           |||||||||||||||||||
Sbjct: 328 ccatcgacttcattattgg 310



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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 138     tattgccttaattattcatgcac 160
               ||||||||||| |||||||||||
Sbjct: 1340742 tattgccttaactattcatgcac 1340720



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>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete
           cds
          Length = 3085

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   ggaacatcacaccatcgac 27
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete
           cds
          Length = 2703

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   ggaacatcacaccatcgac 27
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,129,161
Number of Sequences: 3902068
Number of extensions: 1129161
Number of successful extensions: 114715
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114556
Number of HSP's gapped (non-prelim): 158
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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