ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.25
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.25
5emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 44 0.25
6emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.25
7emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.25
8ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.0
9gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosom... 42 1.0
10gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, compl... 42 1.0
11gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se... 42 1.0
12ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 4.0
13ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding ca... 40 4.0
14ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 4.0
15gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRN... 40 4.0
16ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 4.0
17ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-bind... 40 4.0
18ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 4.0
19gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, c... 40 4.0
20gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co... 40 4.0

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 164   aaccaataagatcaaccaacaa 185
             ||||||||||||||||||||||
Sbjct: 13404 aaccaataagatcaaccaacaa 13425



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>ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           (LOC452752), mRNA
          Length = 4056

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 57  acagatcatcattttttcaaa 77
           |||||||||||||||||||||
Sbjct: 744 acagatcatcattttttcaaa 724



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>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete
            sequence
          Length = 162676

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 168  aataagatcaaccaacaaatgtaca 192
            ||||||||||||||||||| |||||
Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551



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>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence
          Length = 182661

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 168   aataagatcaaccaacaaatgtaca 192
             ||||||||||||||||||| |||||
Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902



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>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence
          Length = 165682

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    atcaaccaacaaatgtacata 194
              |||||||||||||||||||||
Sbjct: 131886 atcaaccaacaaatgtacata 131866



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>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 3
           (LOC529923), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tgaagctgctgctcttctcc 219
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 2
           (LOC529923), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tgaagctgctgctcttctcc 219
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 4
           (LOC529923), mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tgaagctgctgctcttctcc 219
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone
            MGC:81517 IMAGE:6637322), complete cds
          Length = 3425

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   actgctgttgctcgttccaa 102
            ||||||||||||||||||||
Sbjct: 3043 actgctgttgctcgttccaa 3024



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>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 4 (LOC477456), mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tgaagctgctgctcttctcc 219
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 1 (LOC477456), mRNA
          Length = 2376

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tgaagctgctgctcttctcc 219
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 3 (LOC477456), mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 tgaagctgctgctcttctcc 219
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence
          Length = 87833

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atgaagctgctgctcttctc 218
             ||||||||||||||||||||
Sbjct: 84973 atgaagctgctgctcttctc 84954



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>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atgaagctgctgctcttctc 218
             ||||||||||||||||||||
Sbjct: 46103 atgaagctgctgctcttctc 46084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,279,665
Number of Sequences: 3902068
Number of extensions: 3279665
Number of successful extensions: 67461
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67358
Number of HSP's gapped (non-prelim): 103
length of query: 302
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 280
effective length of database: 17,147,199,772
effective search space: 4801215936160
effective search space used: 4801215936160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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