Clone Name | rbastl55c09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 aaccaataagatcaaccaacaa 185 |||||||||||||||||||||| Sbjct: 13404 aaccaataagatcaaccaacaa 13425
>ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC452752), mRNA Length = 4056 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 acagatcatcattttttcaaa 77 ||||||||||||||||||||| Sbjct: 744 acagatcatcattttttcaaa 724
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence Length = 162676 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 aataagatcaaccaacaaatgtaca 192 ||||||||||||||||||| ||||| Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence Length = 182661 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 aataagatcaaccaacaaatgtaca 192 ||||||||||||||||||| ||||| Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902
>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence Length = 165682 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcaaccaacaaatgtacata 194 ||||||||||||||||||||| Sbjct: 131886 atcaaccaacaaatgtacata 131866
>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 3 (LOC529923), mRNA Length = 2313 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgaagctgctgctcttctcc 219 |||||||||||||||||||| Sbjct: 296 tgaagctgctgctcttctcc 315
>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 2 (LOC529923), mRNA Length = 2184 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgaagctgctgctcttctcc 219 |||||||||||||||||||| Sbjct: 296 tgaagctgctgctcttctcc 315
>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 4 (LOC529923), mRNA Length = 2340 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgaagctgctgctcttctcc 219 |||||||||||||||||||| Sbjct: 296 tgaagctgctgctcttctcc 315
>gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone MGC:81517 IMAGE:6637322), complete cds Length = 3425 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 actgctgttgctcgttccaa 102 |||||||||||||||||||| Sbjct: 3043 actgctgttgctcgttccaa 3024
>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 4 (LOC477456), mRNA Length = 2505 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgaagctgctgctcttctcc 219 |||||||||||||||||||| Sbjct: 500 tgaagctgctgctcttctcc 519
>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 1 (LOC477456), mRNA Length = 2376 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgaagctgctgctcttctcc 219 |||||||||||||||||||| Sbjct: 500 tgaagctgctgctcttctcc 519
>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 3 (LOC477456), mRNA Length = 2532 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tgaagctgctgctcttctcc 219 |||||||||||||||||||| Sbjct: 500 tgaagctgctgctcttctcc 519
>gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence Length = 87833 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 atgaagctgctgctcttctc 218 |||||||||||||||||||| Sbjct: 84973 atgaagctgctgctcttctc 84954
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence Length = 163597 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 atgaagctgctgctcttctc 218 |||||||||||||||||||| Sbjct: 46103 atgaagctgctgctcttctc 46084 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,279,665 Number of Sequences: 3902068 Number of extensions: 3279665 Number of successful extensions: 67461 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67358 Number of HSP's gapped (non-prelim): 103 length of query: 302 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 280 effective length of database: 17,147,199,772 effective search space: 4801215936160 effective search space used: 4801215936160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)