ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FADE_ECOLI (Q47146) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) ... 30 1.9
2FADE_ECO57 (Q8X7R2) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) ... 30 1.9
3FADE_SALTY (Q8ZRJ7) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) ... 28 7.2
4FADE_SALTI (Q8Z937) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) ... 28 7.2

>FADE_ECOLI (Q47146) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) (ACDH)|
          Length = 814

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 280 IVPFDFDRKLKSRHSAPIFKSCIVVVPSLSR 188
           +VPF+F    KS  SAP+F+    V+P +SR
Sbjct: 55  LVPFNFAPMRKSMISAPVFRGFRKVMPPMSR 85



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>FADE_ECO57 (Q8X7R2) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) (ACDH)|
          Length = 814

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 280 IVPFDFDRKLKSRHSAPIFKSCIVVVPSLSR 188
           +VPF+F    KS  SAP+F+    V+P +SR
Sbjct: 55  LVPFNFAPMRKSMISAPVFRGFRKVMPPMSR 85



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>FADE_SALTY (Q8ZRJ7) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) (ACDH)|
          Length = 814

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 280 IVPFDFDRKLKSRHSAPIFKSCIVVVPSLSR 188
           +VPF+     KS  SAP+F+    V+P +SR
Sbjct: 55  LVPFNLTPMRKSMISAPVFRGFRKVMPPMSR 85



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>FADE_SALTI (Q8Z937) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) (ACDH)|
          Length = 814

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 280 IVPFDFDRKLKSRHSAPIFKSCIVVVPSLSR 188
           +VPF+     KS  SAP+F+    V+P +SR
Sbjct: 55  LVPFNLTPMRKSMISAPVFRGFRKVMPPMSR 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,726,817
Number of Sequences: 219361
Number of extensions: 744065
Number of successful extensions: 1443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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