>gb|AY863051.1| Zea mays putative methyl-binding domain protein MBD115 mRNA, complete
            cds
          Length = 1456

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 234  gcgctgtcgggttaaacacgcttacagtcctcaaagcaaatgcg 277
            |||||||| |||||| |||| ||||| | |||||||||||||||
Sbjct: 1209 gcgctgtcaggttaaccacgattacaattctcaaagcaaatgcg 1166

>gb|AY108379.1| Zea mays PCO146110 mRNA sequence
          Length = 762

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 234 gcgctgtcgggttaaacacgcttacagtcctcaaagcaaatgcg 277
           |||||||| |||||| |||| ||||| | |||||||||||||||
Sbjct: 453 gcgctgtcaggttaaccacgattacaattctcaaagcaaatgcg 410

>emb|AL808011.11| Mouse DNA sequence from clone RP23-32O21 on chromosome 4, complete
             sequence
          Length = 147327

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 67    acagtagcataagtattatgtctgtgt 93
             ||||| |||||||||||||||||||||
Sbjct: 60270 acagtggcataagtattatgtctgtgt 60244

>ref|XM_550626.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1363

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   ggacataaaggtcaggttaca 63
            |||||||||||||||||||||
Sbjct: 1289 ggacataaaggtcaggttaca 1269

>ref|XM_590415.2| PREDICTED: Bos taurus similar to HEF-like protein (LOC512832), mRNA
          Length = 2358

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 162  cctgccgccctgcagcacctc 182
            |||||||||||||||||||||
Sbjct: 2278 cctgccgccctgcagcacctc 2298

>gb|AC165154.2| Mus musculus BAC clone RP23-302C3 from chromosome 14, complete sequence
          Length = 225721

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 286   tcctaagcacacagagaccaagttt 310
             |||||||||||||||||||| ||||
Sbjct: 98805 tcctaagcacacagagaccatgttt 98829

>gb|AY770495.1| Oryza sativa (indica cultivar-group) iron-superoxide dismutase
            (Fe-SODb) mRNA, complete cds, alternatively spliced
          Length = 1546

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   ggacataaaggtcaggttaca 63
            |||||||||||||||||||||
Sbjct: 1442 ggacataaaggtcaggttaca 1422

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 43      ggacataaaggtcaggttaca 63
               |||||||||||||||||||||
Sbjct: 2259816 ggacataaaggtcaggttaca 2259796

>emb|BX255947.6| Zebrafish DNA sequence from clone CH211-260D9 in linkage group 19,
             complete sequence
          Length = 147891

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    tatttatgaataacaacacaa 36
             |||||||||||||||||||||
Sbjct: 54337 tatttatgaataacaacacaa 54357

>gb|AY186604.1| Helianthus annuus TIR-NBS-LRR resistance gene candidate protein
           RGC1.2 gene, partial cds
          Length = 431

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 124 ttacaaatgataataatgacc 144
           |||||||||||||||||||||
Sbjct: 181 ttacaaatgataataatgacc 201

>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 43     ggacataaaggtcaggttaca 63
              |||||||||||||||||||||
Sbjct: 119273 ggacataaaggtcaggttaca 119253

>dbj|AK071301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087L08, full
            insert sequence
          Length = 1447

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   ggacataaaggtcaggttaca 63
            |||||||||||||||||||||
Sbjct: 1273 ggacataaaggtcaggttaca 1253

>dbj|AK062073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E11, full
            insert sequence
          Length = 1363

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   ggacataaaggtcaggttaca 63
            |||||||||||||||||||||
Sbjct: 1289 ggacataaaggtcaggttaca 1269

>dbj|AB014056.1| Oryza sativa (japonica cultivar-group) mRNA for iron-superoxide
            dismutase, complete cds
          Length = 1353

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   ggacataaaggtcaggttaca 63
            |||||||||||||||||||||
Sbjct: 1279 ggacataaaggtcaggttaca 1259

>ref|NM_152506.1| Homo sapiens chromosome 21 open reading frame 129 (C21orf129), mRNA
          Length = 2033

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  aagccagcctgccgccctgc 174
            ||||||||||||||||||||
Sbjct: 1298 aagccagcctgccgccctgc 1279

>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gccaaaatggcttatttatg 23
              ||||||||||||||||||||
Sbjct: 179924 gccaaaatggcttatttatg 179905

>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence
          Length = 123800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ggcttatttatgaataacaa 31
             ||||||||||||||||||||
Sbjct: 74920 ggcttatttatgaataacaa 74901

>emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chromosome 1 Contains part
             of the PDE4B gene for phosphodiesterase 4B, cAMP-specific
             (phosphodiesterase E4 dunce homolog, Drosophila), complete
             sequence
          Length = 152113

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ttacaaatgataataatgac 143
             ||||||||||||||||||||
Sbjct: 38256 ttacaaatgataataatgac 38275

>emb|AL731861.9| Zebrafish DNA sequence from clone BUSM1-46I22 in linkage group 19,
             complete sequence
          Length = 87662

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aagttacaaatgataataat 140
             ||||||||||||||||||||
Sbjct: 64162 aagttacaaatgataataat 64143

>dbj|AK057397.1| Homo sapiens cDNA FLJ32835 fis, clone TESTI2003255
          Length = 2033

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  aagccagcctgccgccctgc 174
            ||||||||||||||||||||
Sbjct: 1298 aagccagcctgccgccctgc 1279

>gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complete sequence
          Length = 126750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    taacaacacaatgcaaagga 45
             ||||||||||||||||||||
Sbjct: 92961 taacaacacaatgcaaagga 92980

>dbj|AK047109.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930022D10
            product:unclassifiable, full insert sequence
          Length = 3616

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    gccaaaatggcttatttatg 23
            ||||||||||||||||||||
Sbjct: 3223 gccaaaatggcttatttatg 3204

>dbj|BS000130.1| Pan troglodytes chromosome 22 clone:CH251-010A09, map 22, complete
              sequences
          Length = 201997

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    aagccagcctgccgccctgc 174
              ||||||||||||||||||||
Sbjct: 125313 aagccagcctgccgccctgc 125332

>emb|AL591593.11| Zebrafish DNA sequence from clone BUSM1-211O13, complete sequence
          Length = 121251

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aagttacaaatgataataat 140
              ||||||||||||||||||||
Sbjct: 118469 aagttacaaatgataataat 118488

>emb|AJ544612.1|TRU544612 Takifugu rubripes dmd gene for putative dystrophin, exons 57-65
          Length = 14136

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    caacacaatgcaaaggacat 48
             ||||||||||||||||||||
Sbjct: 12012 caacacaatgcaaaggacat 11993

>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105
          Length = 219256

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    aagccagcctgccgccctgc 174
              ||||||||||||||||||||
Sbjct: 125895 aagccagcctgccgccctgc 125914

>gb|AC109281.5| Mus musculus chromosome 3, clone RP24-66E21, complete sequence
          Length = 222162

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      gccaaaatggcttatttatg 23
              ||||||||||||||||||||
Sbjct: 206486 gccaaaatggcttatttatg 206505

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tgccgccctgcagcacctcg 183
              ||||||||||||||||||||
Sbjct: 922648 tgccgccctgcagcacctcg 922667

>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b,
            complete sequence
          Length = 45450

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  gagaagagaagcctacaatt 229
            ||||||||||||||||||||
Sbjct: 6331 gagaagagaagcctacaatt 6312

>dbj|AP004545.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT26E16, TM0103,
             complete sequence
          Length = 100595

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gagaagagaagcctacaatt 229
             ||||||||||||||||||||
Sbjct: 51036 gagaagagaagcctacaatt 51017

>dbj|AP001615.1| Homo sapiens genomic DNA, chromosome 21, clone:KB657H6, MX1-D21S171
             region, complete sequence
          Length = 124516

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aagccagcctgccgccctgc 174
             ||||||||||||||||||||
Sbjct: 65967 aagccagcctgccgccctgc 65986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,595,404
Number of Sequences: 3902068
Number of extensions: 3595404
Number of successful extensions: 73579
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73494
Number of HSP's gapped (non-prelim): 85
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)