ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, com... 46 0.088
2gb|AC132568.3| Mus musculus BAC clone RP24-484M20 from chromosom... 46 0.088
3gb|AC165162.4| Mus musculus BAC clone RP23-173L24 from chromosom... 44 0.35
4gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, comp... 44 0.35
5gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, compl... 44 0.35
6gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, compl... 44 0.35
7gb|AC092099.4| Homo sapiens BAC clone RP11-616A20 from 7, comple... 44 0.35
8gb|AC120000.17| Mus musculus chromosome 3, clone RP24-133F9, com... 44 0.35
9gb|AF165144.4| Homo sapiens chromosome 8 clone CTA-393A7 map 8ce... 44 0.35
10gb|AC154323.3| Mus musculus BAC clone RP23-307K19 from chromosom... 44 0.35
11gb|U38378.1| Caenorhabditis elegans cosmid R11F4, complete sequence 42 1.4
12gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome... 42 1.4
13gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosom... 42 1.4
14gb|AC108699.3| Homo sapiens 3q BAC RP11-13I12 (Roswell Park Canc... 42 1.4
15emb|BX511106.5| Mouse DNA sequence from clone RP24-82J19 on chro... 42 1.4
16gb|AC069066.22| Homo sapiens 3 BAC RP11-261E7 (Roswell Park Canc... 42 1.4
17gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, comple... 42 1.4
18emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in... 42 1.4
19gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosom... 42 1.4
20emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chro... 42 1.4
21gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosom... 42 1.4
22gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome... 40 5.4
23gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosom... 40 5.4
24gb|AC131336.9| Mus musculus chromosome 1, clone RP23-96A20, comp... 40 5.4
25gb|AY350715.1| Arabidopsis arenosa clone BAC Aer1B10, complete s... 40 5.4
26gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.4
27gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
28emb|AJ000018.1|SSSP13J9 Sus scrofa genomic microsatellite sequen... 40 5.4
29gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosom... 40 5.4
30gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosom... 40 5.4
31gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome... 40 5.4
32gb|AC122272.4| Mus musculus BAC clone RP23-225J2 from 6, complet... 40 5.4
33ref|XM_652382.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.4
34emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 i... 40 5.4
35emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chro... 40 5.4
36emb|AL662799.16| Human DNA sequence from clone XXbac-294E21 on c... 40 5.4
37emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chro... 40 5.4
38emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on ch... 40 5.4
39emb|AL390736.6| Human DNA sequence from clone RP11-209J19 on chr... 40 5.4
40emb|AL161903.19| Human DNA sequence from clone RP11-175A4 on chr... 40 5.4
41emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chr... 40 5.4
42emb|AL031368.2|HS662N3 Human DNA sequence from clone RP4-662N3 o... 40 5.4
43emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chr... 40 5.4
44emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 ... 40 5.4
45emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in ... 40 5.4
46gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, comp... 40 5.4
47gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, comp... 40 5.4
48emb|AL627164.8| Zebrafish DNA sequence from clone RP71-1I20 in l... 40 5.4
49gb|AC011087.6| Homo sapiens, clone RP11-21L20, complete sequence 40 5.4
50gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Can... 40 5.4
51gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR ... 40 5.4
52gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q... 40 5.4
53gb|AC090517.2|AC090517 Homo sapiens chromosome 15 clone RP11-31H... 40 5.4
54dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
55gb|AF309689.1|AF309689 Neurospora crassa chromosome 4 pdx-1 region 40 5.4
56gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosom... 40 5.4
57gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cance... 40 5.4
58gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complet... 40 5.4
59gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, comple... 40 5.4
60gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-467C18, comp... 40 5.4
61emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, ... 40 5.4
62gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26,... 40 5.4
63gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq2... 40 5.4
64gb|U00066.1| Caenorhabditis elegans cosmid R12B2, complete sequence 40 5.4
65gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.4
66emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in ... 40 5.4
67emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 ... 40 5.4
68emb|AL837520.26| Mouse DNA sequence from clone RP23-412O4 on chr... 40 5.4
69emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 ... 40 5.4
70gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome... 40 5.4
71gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
72emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on ch... 40 5.4
73gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complet... 40 5.4
74emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on ch... 40 5.4
75emb|AL691422.15| Mouse DNA sequence from clone RP23-85B20 on chr... 40 5.4
76emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chrom... 40 5.4
77gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosom... 40 5.4
78emb|AL807240.12| Mouse DNA sequence from clone RP23-394F6 on chr... 40 5.4 
>gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, complete sequence
          Length = 220031

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 179   tatggaaaattggaaattatcaagaagaaaaatta 213
             |||||||||||| ||||||| ||||||| ||||||
Sbjct: 55046 tatggaaaattgcaaattataaagaagataaatta 55080
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>gb|AC132568.3| Mus musculus BAC clone RP24-484M20 from chromosome 1, complete sequence
          Length = 133079

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 213    acatgacatacacatacacacac 235
              |||||||||||||||||||||||
Sbjct: 108168 acatgacatacacatacacacac 108190
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>gb|AC165162.4| Mus musculus BAC clone RP23-173L24 from chromosome 3, complete sequence
          Length = 211699

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 213   acatgacatacacatacacaca 234
             ||||||||||||||||||||||
Sbjct: 93536 acatgacatacacatacacaca 93515
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>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence
          Length = 206029

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 210    attacatgacatacacatacacacac 235
              ||||||||| ||||||||||||||||
Sbjct: 197218 attacatgagatacacatacacacac 197193
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>gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, complete sequence
          Length = 120644

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 210   attacatgacatacacatacacacac 235
             ||||||||| ||||||||||||||||
Sbjct: 61005 attacatgagatacacatacacacac 61030
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>gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, complete sequence
          Length = 135955

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 210    attacatgacatacacatacacacac 235
              ||||||||| ||||||||||||||||
Sbjct: 104032 attacatgagatacacatacacacac 104057
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>gb|AC092099.4| Homo sapiens BAC clone RP11-616A20 from 7, complete sequence
          Length = 33234

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 210   attacatgacatacacatacacacac 235
             ||||||||| ||||||||||||||||
Sbjct: 22505 attacatgagatacacatacacacac 22530
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>gb|AC120000.17| Mus musculus chromosome 3, clone RP24-133F9, complete sequence
          Length = 149389

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 213   acatgacatacacatacacaca 234
             ||||||||||||||||||||||
Sbjct: 47007 acatgacatacacatacacaca 47028
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>gb|AF165144.4| Homo sapiens chromosome 8 clone CTA-393A7 map 8cen, complete sequence
          Length = 110994

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 200   aagaagaaaaattacatgacat 221
             ||||||||||||||||||||||
Sbjct: 92437 aagaagaaaaattacatgacat 92458
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>gb|AC154323.3| Mus musculus BAC clone RP23-307K19 from chromosome 14, complete sequence
          Length = 191902

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    catgacatacacatacacacac 235
              ||||||||||||||||||||||
Sbjct: 152815 catgacatacacatacacacac 152836
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>gb|U38378.1| Caenorhabditis elegans cosmid R11F4, complete sequence
          Length = 27371

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 215   atgacatacacatacacacac 235
             |||||||||||||||||||||
Sbjct: 11894 atgacatacacatacacacac 11874
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>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence
          Length = 198403

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    gaaattatcaagaagaaaaat 211
              |||||||||||||||||||||
Sbjct: 178101 gaaattatcaagaagaaaaat 178121
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>gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosome 17, complete
             sequence
          Length = 174143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   gaaattatcaagaagaaaaat 211
             |||||||||||||||||||||
Sbjct: 63230 gaaattatcaagaagaaaaat 63210
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>gb|AC108699.3| Homo sapiens 3q BAC RP11-13I12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151580

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 207   aaaattacat-gacatacacatacacaca 234
             |||||||||| ||||||||||||||||||
Sbjct: 74359 aaaattacatagacatacacatacacaca 74331
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>emb|BX511106.5| Mouse DNA sequence from clone RP24-82J19 on chromosome 11 Contains the
             5' end of a novel gene, complete sequence
          Length = 35405

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   acatacacatacacacacgac 238
             |||||||||||||||||||||
Sbjct: 31151 acatacacatacacacacgac 31171
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>gb|AC069066.22| Homo sapiens 3 BAC RP11-261E7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 146446

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                         
Query: 207  aaaattacat-gacatacacatacacaca 234
            |||||||||| ||||||||||||||||||
Sbjct: 8708 aaaattacatagacatacacatacacaca 8680
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>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence
          Length = 177385

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    acatacacatacacacacgac 238
              |||||||||||||||||||||
Sbjct: 143669 acatacacatacacacacgac 143689
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>emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in linkage group 1,
             complete sequence
          Length = 198219

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 155   aagactcaaatgagtaatataagtt 179
             ||||||||||||||||||| |||||
Sbjct: 80420 aagactcaaatgagtaataaaagtt 80396
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>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete
             sequence
          Length = 196310

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   ggaaattatcaagaagaaaaa 210
             |||||||||||||||||||||
Sbjct: 11619 ggaaattatcaagaagaaaaa 11639
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>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete
              sequence
          Length = 190964

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 215    atgacatacacatacacacac 235
              |||||||||||||||||||||
Sbjct: 120139 atgacatacacatacacacac 120119
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>gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosome 12, complete sequence
          Length = 174961

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 190    ggaaattatcaagaagaaaaa 210
              |||||||||||||||||||||
Sbjct: 139515 ggaaattatcaagaagaaaaa 139535
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>gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome 13, complete sequence
          Length = 212570

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    tacatgacatacacatacacacac 235
              ||||||||| ||||||||||||||
Sbjct: 146043 tacatgacacacacatacacacac 146020
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>gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosome 19, complete sequence
          Length = 170479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    tgacatacacatacacacac 235
              ||||||||||||||||||||
Sbjct: 114040 tgacatacacatacacacac 114021
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>gb|AC131336.9| Mus musculus chromosome 1, clone RP23-96A20, complete sequence
          Length = 121355

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||||||| ||||||||||||||
Sbjct: 84725 tacatgacacacacatacacacac 84748
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>gb|AY350715.1| Arabidopsis arenosa clone BAC Aer1B10, complete sequence
          Length = 78945

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   aattatcaagaagaaaaatt 212
             ||||||||||||||||||||
Sbjct: 60721 aattatcaagaagaaaaatt 60702
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>gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-25N12, complete
              sequence
          Length = 223266

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    acatacacatacacacacga 237
              ||||||||||||||||||||
Sbjct: 146397 acatacacatacacacacga 146378
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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041J17, complete sequence
          Length = 148829

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   attacatgacatacacatacacac 233
             |||||||| |||||||||||||||
Sbjct: 43530 attacatggcatacacatacacac 43553
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>emb|AJ000018.1|SSSP13J9 Sus scrofa genomic microsatellite sequence, clone P13J9
          Length = 573

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 213 acatgacatacacatacacacacg 236
           |||||||| |||||||||||||||
Sbjct: 270 acatgacacacacatacacacacg 293
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>gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosome 10, complete sequence
          Length = 153772

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 212    tacatgacatacacatacacacac 235
              ||||||||||||||| ||||||||
Sbjct: 146994 tacatgacatacacacacacacac 147017
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>gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosome 10, complete
             sequence
          Length = 173543

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||||||||||||| ||||||||
Sbjct: 80752 tacatgacatacacacacacacac 80775
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>gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome 3, complete sequence
          Length = 193517

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    aaaatggagcctttaactaa 143
              ||||||||||||||||||||
Sbjct: 134362 aaaatggagcctttaactaa 134381
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>gb|AC122272.4| Mus musculus BAC clone RP23-225J2 from 6, complete sequence
          Length = 208684

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gaaatcatacacacacagcc 20
             ||||||||||||||||||||
Sbjct: 90756 gaaatcatacacacacagcc 90737
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>ref|XM_652382.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (1.t00089)
           partial mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 gaaattatcaagaagaaaaa 210
           ||||||||||||||||||||
Sbjct: 317 gaaattatcaagaagaaaaa 336
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>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9,
              complete sequence
          Length = 162252

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    gaaattatcaagaagaaaaa 210
              ||||||||||||||||||||
Sbjct: 149396 gaaattatcaagaagaaaaa 149415
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>emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 142067

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   atgacatacacatacacaca 234
             ||||||||||||||||||||
Sbjct: 39610 atgacatacacatacacaca 39629
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>emb|AL662799.16| Human DNA sequence from clone XXbac-294E21 on chromosome 6 contains the
              gene for a novel protein similar to lysophospholipase II
              (LYPLA2), the KNSL2 gene for kinesin-like 2, the PHF1 gene
              for PHD finger protein 1, the gene for divalent cation
              tolerant protein CUTA, the SYNGAP1 gene for synaptic Ras
              GTPase activating protein 1 homolog and five CpG islands,
              complete sequence
          Length = 136021

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    tgacatacacatacacacac 235
              ||||||||||||||||||||
Sbjct: 133480 tgacatacacatacacacac 133499
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>emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chromosome 9 Contains a novel
              gene (FLJ20808) and a ribosomal protein L23a (RPL23A)
              pseudogene, complete sequence
          Length = 150771

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    aagaagaaaaattacatgac 219
              ||||||||||||||||||||
Sbjct: 140691 aagaagaaaaattacatgac 140710
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>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two
             novel genes (FLJ36774) and five CpG islands, complete
             sequence
          Length = 158335

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   acatacacatacacacacga 237
             ||||||||||||||||||||
Sbjct: 30904 acatacacatacacacacga 30885
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>emb|AL390736.6| Human DNA sequence from clone RP11-209J19 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 125681

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||||||| ||||||||||||||
Sbjct: 54058 tacatgacacacacatacacacac 54081
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>emb|AL161903.19| Human DNA sequence from clone RP11-175A4 on chromosome 6 Contains the
             3' end of the SYNGAP1 gene for synaptic Ras GTPase
             activating protein 1 homolog (rat), complete sequence
          Length = 47104

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   tgacatacacatacacacac 235
             ||||||||||||||||||||
Sbjct: 35574 tgacatacacatacacacac 35593
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>emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chromosome 1q31.2-31.3
             Contains the ATP6V1G3 gene for H+ transporting ATPase
             lysosomal 13kDa V1 subunit G isoform 3, two novel genes, a
             prostatic binding protein (PBP) pseudogene and the 5' end
             of the PTPRC gene for receptor type protein tyrosine
             phosphatase C, complete sequence
          Length = 210331

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   gaaaattggaaattatcaag 202
             ||||||||||||||||||||
Sbjct: 75789 gaaaattggaaattatcaag 75770
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>emb|AL031368.2|HS662N3 Human DNA sequence from clone RP4-662N3 on chromosome Xp21.1-21.3,
             complete sequence
          Length = 143890

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||| ||||||||||||||||||
Sbjct: 11345 tacataacatacacatacacacac 11322
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>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the
             3' end of the Nipsnap1 gene for 4-nitrophenylphosphatase
             domain and non-neuronal SNAP25-like protein homolog 1 (C.
             elegans), a novel gene, a ribosomal protein L17 (Rpl17)
             pseudogene, the Nefh gene for neurofilament heavy
             polypeptide, the Ap1b1 gene for adaptor protein complex
             AP-1 beta 1 subunit, the gene for the ortholog of human
             RAS-related protein on chromosome 22, the gene for the
             ortholog of human growth arrest-specific 2 like 1 GAS2L1
             and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   catgacatacacatacacac 233
             ||||||||||||||||||||
Sbjct: 23942 catgacatacacatacacac 23923
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>emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 in linkage group 13,
             complete sequence
          Length = 186151

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   ttaactaaattgataactta 155
             ||||||||||||||||||||
Sbjct: 28599 ttaactaaattgataactta 28618
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>emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in linkage group 23,
             complete sequence
          Length = 171486

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   acacatacacacacgaccag 241
             ||||||||||||||||||||
Sbjct: 49869 acacatacacacacgaccag 49888
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>gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, complete sequence
          Length = 214780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    tacatgacatacacatacacacac 235
              ||||||||| ||||||||||||||
Sbjct: 199826 tacatgacacacacatacacacac 199803
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>gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, complete sequence
          Length = 184019

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   gatgcagtgctgccacaaaa 290
             ||||||||||||||||||||
Sbjct: 54711 gatgcagtgctgccacaaaa 54692
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>emb|AL627164.8| Zebrafish DNA sequence from clone RP71-1I20 in linkage group 11,
             complete sequence
          Length = 84892

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||||||||||||||| ||||||
Sbjct: 72153 tacatgacatacacatatacacac 72130
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>gb|AC011087.6| Homo sapiens, clone RP11-21L20, complete sequence
          Length = 157456

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    tgacatacacatacacacac 235
              ||||||||||||||||||||
Sbjct: 111557 tgacatacacatacacacac 111576
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>gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183357

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                             
Query: 206    aaaaattacatga--catacacatacacaca 234
              |||||||||||||  ||||||||||||||||
Sbjct: 142102 aaaaattacatgatacatacacatacacaca 142072
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>gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete
             sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   atgacatacacatacacaca 234
             ||||||||||||||||||||
Sbjct: 62129 atgacatacacatacacaca 62148
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>gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence
          Length = 182617

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   atgacatacacatacacaca 234
             ||||||||||||||||||||
Sbjct: 67171 atgacatacacatacacaca 67190
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>gb|AC090517.2|AC090517 Homo sapiens chromosome 15 clone RP11-31H5 map 15q21.3, complete
             sequence
          Length = 185446

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ttatggaaaattggaaatta 197
             ||||||||||||||||||||
Sbjct: 27176 ttatggaaaattggaaatta 27195
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 210      attacatgacatacacatacacac 233
                |||||||| |||||||||||||||
Sbjct: 18940332 attacatggcatacacatacacac 18940355
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>gb|AF309689.1|AF309689 Neurospora crassa chromosome 4 pdx-1 region
          Length = 36030

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   cacgaccaggatggagactgctgc 256
             |||||||| |||||||||||||||
Sbjct: 18272 cacgaccacgatggagactgctgc 18249
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>gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosome 17, complete
             sequence
          Length = 198374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||| ||||||||||||||||||
Sbjct: 97916 tacatcacatacacatacacacac 97939
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>gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215023

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    tacatgacatacacatacacacac 235
              ||||| ||||||||||||||||||
Sbjct: 184713 tacattacatacacatacacacac 184690
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>gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complete sequence
          Length = 96559

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aagaagaaaaattacatgac 219
             ||||||||||||||||||||
Sbjct: 65371 aagaagaaaaattacatgac 65390
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>gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, complete sequence
          Length = 162867

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   gatgcagtgctgccacaaaa 290
             ||||||||||||||||||||
Sbjct: 22211 gatgcagtgctgccacaaaa 22230
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>gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-467C18, complete sequence
          Length = 153854

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   ggaaattatcaagaagaaaa 209
             ||||||||||||||||||||
Sbjct: 45818 ggaaattatcaagaagaaaa 45837
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>emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, complete sequence
          Length = 177531

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    atgacatacacatacacaca 234
              ||||||||||||||||||||
Sbjct: 161316 atgacatacacatacacaca 161335
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>gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26, complete sequence
          Length = 124095

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    tacatgacatacacatacacacac 235
              ||||||||||||||| ||||||||
Sbjct: 120593 tacatgacatacacacacacacac 120570
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>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence
          Length = 129690

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   tgacatacacatacacacac 235
             ||||||||||||||||||||
Sbjct: 56104 tgacatacacatacacacac 56123
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>gb|U00066.1| Caenorhabditis elegans cosmid R12B2, complete sequence
          Length = 34646

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   acatacacatacacacacgaccag 241
             |||||||||||||||||| |||||
Sbjct: 33518 acatacacatacacacaccaccag 33541
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     aggatgcagtgctgccacaa 288
               ||||||||||||||||||||
Sbjct: 2876412 aggatgcagtgctgccacaa 2876431
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>emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in linkage group 20,
             complete sequence
          Length = 92426

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   acatacacatacacacacga 237
             ||||||||||||||||||||
Sbjct: 53159 acatacacatacacacacga 53178
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>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24,
              complete sequence
          Length = 188067

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 213    acatgacatacacatacacacacg 236
              |||||| |||||||||||||||||
Sbjct: 177091 acatgaaatacacatacacacacg 177114
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>emb|AL837520.26| Mouse DNA sequence from clone RP23-412O4 on chromosome 2, complete
              sequence
          Length = 128625

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 213    acatgacatacacatacacacacg 236
              |||| |||||||||||||||||||
Sbjct: 103523 acatcacatacacatacacacacg 103500
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>emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 in linkage group 15,
             complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   tacatgacatacacatacacacac 235
             ||||||||| ||||||||||||||
Sbjct: 75217 tacatgacacacacatacacacac 75194
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>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   acatgacatacacatacaca 232
             ||||||||||||||||||||
Sbjct: 79803 acatgacatacacatacaca 79822
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 210      attacatgacatacacatacacac 233
                |||||||| |||||||||||||||
Sbjct: 19098981 attacatggcatacacatacacac 19099004
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>emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on chromosome 9, complete
             sequence
          Length = 192913

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   acatacacatacacacacga 237
             ||||||||||||||||||||
Sbjct: 60169 acatacacatacacacacga 60188
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>gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complete sequence
          Length = 184937

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    tacatgacatacacatacacacac 235
              |||||| |||||||||||||||||
Sbjct: 141517 tacatgccatacacatacacacac 141494
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>emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on chromosome 2, complete
            sequence
          Length = 224818

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  acatacacatacacacacga 237
            ||||||||||||||||||||
Sbjct: 6711 acatacacatacacacacga 6692
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>emb|AL691422.15| Mouse DNA sequence from clone RP23-85B20 on chromosome X, complete
              sequence
          Length = 164287

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 212    tacatgacatacacatacacacac 235
              |||||| |||||||||||||||||
Sbjct: 117246 tacatgccatacacatacacacac 117269
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>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete
              sequence
          Length = 231247

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    tacatgacatacacatacacacac 235
              ||||||||| ||||||||||||||
Sbjct: 200617 tacatgacacacacatacacacac 200594
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>gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosome 9, complete sequence
          Length = 219361

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   acatacacatacacacacga 237
             ||||||||||||||||||||
Sbjct: 47845 acatacacatacacacacga 47864
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>emb|AL807240.12| Mouse DNA sequence from clone RP23-394F6 on chromosome X, complete
             sequence
          Length = 115145

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gcagtgctgccacaaaactg 293
             ||||||||||||||||||||
Sbjct: 15205 gcagtgctgccacaaaactg 15186


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,572,272
Number of Sequences: 3902068
Number of extensions: 5572272
Number of successful extensions: 294712
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 294134
Number of HSP's gapped (non-prelim): 581
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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