ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR390310.1| Gallus gallus finished cDNA, clone ChEST234p17 42 1.4
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
3dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
4dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
5dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
6gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, co... 40 5.7
7gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Can... 40 5.7
8emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in... 40 5.7

>emb|CR390310.1| Gallus gallus finished cDNA, clone ChEST234p17
          Length = 1645

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 222 gtatgaaaacagccattcctt 242
           |||||||||||||||||||||
Sbjct: 495 gtatgaaaacagccattcctt 475



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 297      tctcctcagatcgacacctct 317
                |||||||||||||||||||||
Sbjct: 23968123 tctcctcagatcgacacctct 23968143



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 297     tctcctcagatcgacacctct 317
               |||||||||||||||||||||
Sbjct: 6273780 tctcctcagatcgacacctct 6273760



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>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1267_F10
          Length = 162669

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 297   tctcctcagatcgacacctct 317
             |||||||||||||||||||||
Sbjct: 71167 tctcctcagatcgacacctct 71147



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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1476_F05
          Length = 125426

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 297  tctcctcagatcgacacctct 317
            |||||||||||||||||||||
Sbjct: 3161 tctcctcagatcgacacctct 3181



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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    tctcctcagatcgacacctct 317
              |||||||||||||||||||||
Sbjct: 102087 tctcctcagatcgacacctct 102107



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>gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, complete sequence
          Length = 227440

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    tgctcacccacatgctcatc 373
              ||||||||||||||||||||
Sbjct: 100132 tgctcacccacatgctcatc 100113



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>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147895

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    tatcggtgtccatttgctca 359
              ||||||||||||||||||||
Sbjct: 144817 tatcggtgtccatttgctca 144836



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>emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in linkage group 16,
              complete sequence
          Length = 199783

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    aacactgcaaaaactctcca 198
              ||||||||||||||||||||
Sbjct: 150402 aacactgcaaaaactctcca 150383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,577,895
Number of Sequences: 3902068
Number of extensions: 3577895
Number of successful extensions: 52621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52582
Number of HSP's gapped (non-prelim): 39
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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