ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BPHY_PSEAE (Q9HWR3) Probable bacteriophytochrome (EC 2.7.13.3) (... 28 6.3

>BPHY_PSEAE (Q9HWR3) Probable bacteriophytochrome (EC 2.7.13.3)|
           (Phytochrome-like protein)
          Length = 728

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 97  MQELRREPEIDLYKTINTHLSL*QSPRADVHRLQHDGGDC 216
           +Q L+R+PE D+Y T N       SP         DGGDC
Sbjct: 378 LQRLQRDPERDIYHTDNWPQPSEDSP---------DGGDC 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,345,169
Number of Sequences: 219361
Number of extensions: 609260
Number of successful extensions: 1611
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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