Clone Name | rbastl55b10 |
---|---|
Clone Library Name | barley_pub |
>DRC1A_CHICK (Q5ZM13) Down-regulated by CTNNB1 protein A| Length = 515 Score = 32.0 bits (71), Expect = 0.37 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Frame = +2 Query: 53 TNTYFIYSYK-VANITVLNNMPEKSGT---------CQEKTTIKGCSRQALVCASRRPDP 202 T T F S++ V+ +TV NN SGT QE+ I G R L S++P+ Sbjct: 443 TTTVFSKSFEQVSGVTVANNRGGVSGTEANRFSACSLQEEKLIYGTERTDLPVLSKQPNQ 502 Query: 203 QRP 211 QRP Sbjct: 503 QRP 505
>YO83_CAEEL (P34619) Hypothetical protein ZK1236.3| Length = 1000 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 116 EKSGTCQEKTTIKGCSRQALVCASRRPDP 202 EKSG TIK + L+C SR+ DP Sbjct: 805 EKSGRLNVSNTIKAINEYRLLCNSRQADP 833
>VCLC_PEA (P13918) Vicilin precursor| Length = 459 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +2 Query: 149 IKGCSRQALVCASRRPDPQRPDIPKRNR 232 + G S A VC S R DPQ P I K N+ Sbjct: 15 LMGISFLASVCVSSRSDPQNPFIFKSNK 42
>CYB_CAEEL (P24890) Cytochrome b| Length = 370 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = -1 Query: 272 LVCVWCHVGLLFSCGSS*ECLVFGD---LAVARRILEPGGYNL-LWLFFLDRSLIFP 114 LV V H+ L S GS+ GD + + L YN+ +WL F+ SLI+P Sbjct: 187 LVIVLGHLIFLHSTGSTSSLYCHGDYDKVCFSPEYLGKDAYNIVIWLLFIVLSLIYP 243
>CNTN2_MOUSE (Q61330) Contactin-2 precursor (Axonin-1) (Axonal glycoprotein| TAG-1) (Transient axonal glycoprotein 1) (TAX-1) Length = 1040 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 83 VANITVLNNMPEKSGT--CQEKTTIKGCSRQALVCASRRPDP 202 + ++T+LN GT C +T + G S++A V P P Sbjct: 571 IGDLTILNAQLRHGGTYTCMAQTVVDGASKEATVLVRGPPGP 612
>CSTA_HELPY (P56190) Carbon starvation protein A homolog| Length = 687 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -1 Query: 320 IEFGSVSMLRSCVLFSLVCVWC-HVGLLFSCGSS*ECLVFGDLAVARRILEPGGYNL 153 + +GS+ M L +LVC H GL F+ S E + D+A A ++ G+N+ Sbjct: 363 VGYGSMVMESVVALMALVCAGILHPGLYFAINSP-EVSIGKDIADAASVISSWGFNI 418
>RFBP_SALTY (P26406) Undecaprenyl-phosphate galactose phosphotransferase (EC| 2.7.8.6) (Galactosyl-P-P-undecaprenol synthetase) Length = 476 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +2 Query: 53 TNTYFIYSYKVANITVLNNMPEKSGTCQEKTTIKGCSRQALVCAS 187 T+ FI+S++V + + NN+ ++S ++T CS L+ AS Sbjct: 252 TDMSFIFSHEVMLLRIQNNLAKRSSRFLKRTFDIVCSIMILIIAS 296
>CR1BA_BACTK (P0A373) Pesticidal crystal protein cry1Ba (Insecticidal| delta-endotoxin CryIB(a)) (Crystaline entomocidal protoxin) (140 kDa crystal protein) Length = 1228 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = +3 Query: 222 RGTARKKQPYMTPHTH*REQHT--GPQHTDRPKLNS 323 RGTA QPY +P ++ T P+ T+RP S Sbjct: 425 RGTANYSQPYESPGLQLKDSETELPPETTERPNYES 460
>CR1BA_BACTE (P0A374) Pesticidal crystal protein cry1Ba (Insecticidal| delta-endotoxin CryIB(a)) (Crystaline entomocidal protoxin) (140 kDa crystal protein) Length = 1228 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = +3 Query: 222 RGTARKKQPYMTPHTH*REQHT--GPQHTDRPKLNS 323 RGTA QPY +P ++ T P+ T+RP S Sbjct: 425 RGTANYSQPYESPGLQLKDSETELPPETTERPNYES 460
>PCNT_MOUSE (P48725) Pericentrin| Length = 1920 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/60 (23%), Positives = 27/60 (45%) Frame = +1 Query: 121 IRDLSRKNNHKRL*PPGSSMRLATARSPKTRHS*EEPQEKSNPXXXXXXXRENNTQDLNI 300 +RD K+NH++L G LA +T+H E ++ ++ E + +L + Sbjct: 641 LRDAQEKHNHEQLLQQGHQQLLALRMELETKHRSELTEQLASSESRRQALLETHVAELQV 700 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,811,214 Number of Sequences: 219361 Number of extensions: 957553 Number of successful extensions: 2396 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2396 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)