ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464514.1| Oryza sativa (japonica cultivar-group), mRNA 119 7e-24
2ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA 119 7e-24
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
4dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
5dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
6dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
7dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
8dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
9ref|XM_629637.1| Dictyostelium discoideum hypothetical protein (... 42 1.3
10gb|AC146789.30| Medicago truncatula clone mth2-71h24, complete s... 42 1.3
11emb|BX469912.5| Zebrafish DNA sequence from clone CH211-156L18 i... 42 1.3
12emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 42 1.3
13gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, comple... 42 1.3
14gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21... 40 5.0
15gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, com... 40 5.0
16emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 5.0
17emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 5.0
18emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 5.0
19emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 40 5.0
20gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 5.0
21gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete se... 40 5.0
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
23dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
24dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.0
25gb|AC004459.1|AC004459 Homo sapiens BAC clone CTA-273G1 from 8q2... 40 5.0
26gb|AC123939.5| Mus musculus BAC clone RP23-418I14 from 12, compl... 40 5.0
27gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, co... 40 5.0
28gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 40 5.0
29emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chr... 40 5.0 
>ref|XM_464514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2525

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2520 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2461

                                                                        
Query: 115  ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
            || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 2460 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 2403

                                                               
Query: 175  agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
            ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 2402 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 2352
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>ref|XM_464515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2981

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2976 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2917

                                                                        
Query: 115  ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
            || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 2916 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 2859

                                                               
Query: 175  agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
            ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 2858 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 2808
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Plus

                                                                           
Query: 55      aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
               |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 5628127 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 5628186

                                                                           
Query: 115     ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
               || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 5628187 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 5628244

                                                                  
Query: 175     agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
               ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 5628245 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 5628295
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Plus

                                                                         
Query: 55    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
             |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 55863 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 55922

                                                                         
Query: 115   ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
             || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 55923 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 55980

                                                                
Query: 175   agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
             ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 55981 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 56031
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>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full
            insert sequence
          Length = 2525

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2520 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2461

                                                                        
Query: 115  ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
            || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 2460 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 2403

                                                               
Query: 175  agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
            ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 2402 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 2352
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>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full
            insert sequence
          Length = 2981

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2976 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2917

                                                                        
Query: 115  ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
            || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 2916 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 2859

                                                               
Query: 175  agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
            ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 2858 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 2808
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>dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D11, full
            insert sequence
          Length = 1713

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 1708 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 1649

                                                                        
Query: 115  ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
            || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 1648 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 1591

                                                               
Query: 175  agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
            ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 1590 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 1540
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>dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G02, full
           insert sequence
          Length = 998

 Score =  119 bits (60), Expect = 7e-24
 Identities = 144/171 (84%), Gaps = 2/171 (1%)
 Strand = Plus / Minus

                                                                       
Query: 55  aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 114
           |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 993 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 934

                                                                       
Query: 115 ggaaaaatcagggacctgtcaagaaaaaacaaccataaaaggttgtagccgccaggctct 174
           || |||| |||||| |||    ||||||||||||||| |||| |||     | |||||||
Sbjct: 933 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaaggctgtcatgacaaggctct 876

                                                              
Query: 175 agtatgcgcctcgcgacggccagatccccaaagaccagacattcctaagag 225
           ||||||||||| || | |||||||||||| || ||||| |||||| |||||
Sbjct: 875 agtatgcgccttgcaatggccagatcccccaacaccaggcattcccaagag 825
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>ref|XM_629637.1| Dictyostelium discoideum hypothetical protein (DDB0184418), partial
           mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 317 caatagcaatatcaatatcaa 337
           |||||||||||||||||||||
Sbjct: 369 caatagcaatatcaatatcaa 389
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>gb|AC146789.30| Medicago truncatula clone mth2-71h24, complete sequence
          Length = 127922

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 29    gataaaaaccatagaacttgcaaaa 53
             ||||||||| |||||||||||||||
Sbjct: 35119 gataaaaacaatagaacttgcaaaa 35095
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>emb|BX469912.5| Zebrafish DNA sequence from clone CH211-156L18 in linkage group 11,
              complete sequence
          Length = 175462

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     aaacaaacacatacttcattt 71
              |||||||||||||||||||||
Sbjct: 141423 aaacaaacacatacttcattt 141443
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>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 65     ttcatttattcttataaggttgcaa 89
              ||||||||||||||||| |||||||
Sbjct: 153175 ttcatttattcttataatgttgcaa 153151
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>gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, complete sequence
          Length = 199589

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 330    aatatcaaccagacatgccaa 350
              |||||||||||||||||||||
Sbjct: 102565 aatatcaaccagacatgccaa 102545
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>gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21.3, complete sequence
          Length = 320187

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    agaaaaaacaaccataaaag 155
              ||||||||||||||||||||
Sbjct: 132548 agaaaaaacaaccataaaag 132567
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>gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, complete sequence
          Length = 216082

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  aagaaaaaacaaccataaaa 154
            ||||||||||||||||||||
Sbjct: 4374 aagaaaaaacaaccataaaa 4355
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aaacaaacacatacttcatt 70
              ||||||||||||||||||||
Sbjct: 474672 aaacaaacacatacttcatt 474653
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aaacaaacacatacttcatt 70
              ||||||||||||||||||||
Sbjct: 471926 aaacaaacacatacttcatt 471907
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aaacaaacacatacttcatt 70
              ||||||||||||||||||||
Sbjct: 494815 aaacaaacacatacttcatt 494796
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>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4
          Length = 272698

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   ttgcaaaacaaacacatact 65
            ||||||||||||||||||||
Sbjct: 8573 ttgcaaaacaaacacatact 8554
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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     gttgcaaatattacagtcct 102
              ||||||||||||||||||||
Sbjct: 118856 gttgcaaatattacagtcct 118837
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>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
          Length = 129513

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aaaacaaacacatacttcat 69
             ||||||||||||||||||||
Sbjct: 86243 aaaacaaacacatacttcat 86224
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 90      atattacagtcctcaacaac 109
               ||||||||||||||||||||
Sbjct: 2401512 atattacagtcctcaacaac 2401531
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>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0025F03
          Length = 138042

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    atattacagtcctcaacaac 109
             ||||||||||||||||||||
Sbjct: 77482 atattacagtcctcaacaac 77501
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>dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5
          Length = 88398

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aaacacatacttcatttatt 74
             ||||||||||||||||||||
Sbjct: 30278 aaacacatacttcatttatt 30259
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>gb|AC004459.1|AC004459 Homo sapiens BAC clone CTA-273G1 from 8q21, complete sequence
          Length = 41798

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   agaaaaaacaaccataaaag 155
             ||||||||||||||||||||
Sbjct: 34525 agaaaaaacaaccataaaag 34544
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>gb|AC123939.5| Mus musculus BAC clone RP23-418I14 from 12, complete sequence
          Length = 188743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gttgcaaatattacagtcct 102
             ||||||||||||||||||||
Sbjct: 22400 gttgcaaatattacagtcct 22381
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>gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, complete sequence
          Length = 154352

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   aagaaaaaacaaccataaaa 154
             ||||||||||||||||||||
Sbjct: 94329 aagaaaaaacaaccataaaa 94348
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 34      aaaccatagaacttgcaaaacaaa 57
               ||||||||||||||||||| ||||
Sbjct: 1394266 aaaccatagaacttgcaaatcaaa 1394289
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>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete
              sequence
          Length = 201723

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    ggaaccgcaagaaaaaagcaaccc 248
              |||||||||||||||||| |||||
Sbjct: 109591 ggaaccgcaagaaaaaaggaaccc 109614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,577,559
Number of Sequences: 3902068
Number of extensions: 3577559
Number of successful extensions: 73716
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73542
Number of HSP's gapped (non-prelim): 166
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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