ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GCSPB_STAHJ (Q4L6N5) Probable glycine dehydrogenase [decarboxyla... 28 6.2
2GNL3_XENTR (Q6P4W5) Guanine nucleotide-binding protein-like 3 (N... 28 8.1

>GCSPB_STAHJ (Q4L6N5) Probable glycine dehydrogenase [decarboxylating] subunit 2|
           (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine
           cleavage system P-protein subunit 2)
          Length = 492

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 230 LQPFGE*SLRMCGTARVRNG--LRSIFSVHNFVPVIAFCLHPFVLLGAKVKQAVLR 69
           ++  G   LR    A V N   +++    H  +P   +C H FVL G+K K+  +R
Sbjct: 342 IRTMGAEGLREVSEAAVLNANYIKASLKDHYEIPYEQYCKHEFVLSGSKQKEHGVR 397



to top

>GNL3_XENTR (Q6P4W5) Guanine nucleotide-binding protein-like 3|
           (Nucleostemin-like protein)
          Length = 548

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 58  DVPSRRTACFTLAPSKTKGCKQKAMTGTKLCTE 156
           ++P+    C   APSK+ G K K      LCTE
Sbjct: 192 ELPTVPFRCLPQAPSKSPGKKHKVPNTADLCTE 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,308,787
Number of Sequences: 219361
Number of extensions: 671435
Number of successful extensions: 1514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top