ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55b07 |
|---|---|
| Clone Library Name | barley_pub |
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 71 EFLPMFFCTYLFSLKNAQKLH 9 EF+P FF LF+LKNA +H Sbjct: 148 EFIPYFFLNQLFNLKNATTIH 168
>Y387_LISIN (Q92ES1) Putative Nudix hydrolase lin0387 (EC 3.6.-.-)| Length = 169 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -2 Query: 71 EFLPMFFCTYLFSLKNAQKLH 9 EF+P FF LF LKNA +H Sbjct: 148 EFIPYFFLNQLFELKNATTIH 168
>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +2 Query: 59 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 226 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +2 Query: 59 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 226 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +2 Query: 44 MYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQ 223 ++R+T + S RT+ + + S+ R S ++T R NH E+ + P ++ R + Sbjct: 90 LFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRR 149
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 293 GEWKFRVKHFSSYGFGEAEAD 231 G W F+V HFS YG +++ + Sbjct: 871 GSWVFKVSHFSKYGLQDSDEE 891
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 217 PCSFIDRCCNCCL 179 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 217 PCSFIDRCCNCCL 179 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 217 PCSFIDRCCNCCL 179 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 293 GEWKFRVKHFSSYGFGEAEAD 231 G W F+V HFS YG +++ + Sbjct: 870 GSWVFKVSHFSKYGLQDSDEE 890
>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed| message 1 protein) (Castration-induced prostatic apoptosis-related protein 1) (CIPAR-1) Length = 296 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 56 TWEGTHSSIQRTKASQPIFSQTRSAT---STKAT*NRVFTNHPKEAAITTP 199 TW T S+ A+ P+ S T +A+ +T A+ HP+E A+T+P Sbjct: 41 TW--TTSAQHTAMATTPVASATHNASVLRTTAASLTSQLPTHPREEAVTSP 89
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 293 GEWKFRVKHFSSYGFGEAEAD 231 G+W F+V+HFS YG + E + Sbjct: 925 GKWIFKVQHFSRYGLLDDEEE 945
>BXCN_CLOBO (P46081) Botulinum neurotoxin type C1, nontoxic component| Length = 1196 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/52 (23%), Positives = 24/52 (46%) Frame = +1 Query: 85 ENKSITTNILPDQISYIDQSYIESSVHQSSKRGSNYNTYR*SYKESARWSAS 240 +N + ++ + SY+D SYI S + NY Y + E++ + + Sbjct: 1020 DNPITSEEVIRNYFSYLDNSYIRDSSKSLLEYNKNYQLYNYVFPETSLYEVN 1071
>YP96_CAEEL (Q09476) Hypothetical protein C28H8.6 in chromosome III| Length = 256 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +3 Query: 51 EKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIECSPIIQKRQQLQ 194 E++G+ AF E+ +HNQ+SP+ HR R C ++ K ++ Sbjct: 59 ERNGR----AFCEEDYHNQFSPKCQGCHRAITDR--CVSVMNKNFHIE 100
>CXI7_CONRA (Q7Z095) I-superfamily conotoxin R11.7| Length = 46 Score = 27.7 bits (60), Expect = 7.7 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 Query: 217 PCSFIDRCCNCCL 179 PC + CCNCCL Sbjct: 11 PCEYHSDCCNCCL 23
>METE_RALSO (Q8XS05) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 776 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 48 TEKHGKELIAAFREQKHHNQYSPRPDQLHRPKLHRIE 158 T + EL+ AF E + N+ P +H P++ R+E Sbjct: 667 TSRSNMELLDAFGEFAYPNEIGPGVYDIHSPRVPRVE 703
>VTDB_RAT (P04276) Vitamin D-binding protein precursor (DBP) (Group-specific| component) (Gc-globulin) (VDB) Length = 476 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%) Frame = -2 Query: 89 FSECCYEFLPM--FFCTY 42 F ECCYE PM F C+Y Sbjct: 296 FEECCYETTPMGIFMCSY 313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,894,598 Number of Sequences: 219361 Number of extensions: 840538 Number of successful extensions: 2500 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2435 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2500 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
