>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence
          Length = 1871

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 243  ttcaccaaa-cccgtaggagctgaagtgcttcactctgaacttccactcgcccttg 297
            ||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct: 1579 ttcaccaaagcccgtaggcgctgaagtgcttcaccctgaacttccactctcccttg 1524

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                          
Query: 241     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggc 299
               ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 3343074 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggc 3343016



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 241     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcc 293
               ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 3351809 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcc 3351757

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                          
Query: 241     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggc 299
               ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 3343019 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggc 3342961



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 241     gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcc 293
               ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 3351754 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcc 3351702

>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 241   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggc 299
             ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 22127 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggc 22069



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 241   gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcc 293
             ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 30862 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcc 30810

>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence
          Length = 625

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 256 taggagctgaagtgcttcactctgaacttccactcgcccttggc 299
           |||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 184 taggcgctgaagtgcttcaccctgaacttccactctcccttggc 227

>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence
          Length = 1900

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 256  taggagctgaagtgcttcactctgaacttccactcgcccttggc 299
            |||| |||||| |||||||| |||||||||||||| ||||||||
Sbjct: 1730 taggcgctgaaatgcttcaccctgaacttccactctcccttggc 1687

>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds
          Length = 732

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 260 agctgaagtgcttcactctgaacttccactc 290
           |||||||||||||||| ||||||||||||||
Sbjct: 418 agctgaagtgcttcaccctgaacttccactc 388

>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 168 atcatccaaaagaggcagcaattacaaca 196
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522

>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial
           mRNA
          Length = 4611

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 168 atcatccaaaagaggcagcaattacaaca 196
           ||||||||||||| |||| ||||||||||
Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522

>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence
          Length = 150864

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 48    acagaaaaacatgggaaggaactca 72
             ||||||||||||| |||||||||||
Sbjct: 93457 acagaaaaacatgagaaggaactca 93481

>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16,
             complete sequence
          Length = 145536

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 86    agaacaaaagcatcacaaccaatat 110
             ||||||||||||||||||| |||||
Sbjct: 40528 agaacaaaagcatcacaactaatat 40552

>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence
          Length = 175296

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 257    aggagctgaagtgcttcactctgaa 281
              |||||||| ||||||||||||||||
Sbjct: 135270 aggagctgtagtgcttcactctgaa 135294

>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 168    atcatccaaaagaggcagcaattacaaca 196
              ||||||||||||| |||| ||||||||||
Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803

>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 86    agaacaaaagcatcacaaccaatat 110
             ||||||||||||||||||| |||||
Sbjct: 17970 agaacaaaagcatcacaactaatat 17994

>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
              sequence
          Length = 214861

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 257    aggagctgaagtgcttcactctgaa 281
              |||||||| ||||||||||||||||
Sbjct: 206265 aggagctgtagtgcttcactctgaa 206241

>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence
          Length = 256126

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 86     agaacaaaagcatcacaaccaatat 110
              ||||||||||||||||||| |||||
Sbjct: 208905 agaacaaaagcatcacaactaatat 208929

>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence
          Length = 154657

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    aaaaagatatgtacagaaaa 55
             ||||||||||||||||||||
Sbjct: 28955 aaaaagatatgtacagaaaa 28936

>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     tgtacagaaaaacatgggaaggaa 68
              ||||||||| ||||||||||||||
Sbjct: 120123 tgtacagaagaacatgggaaggaa 120100

>gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA
            clone MGC:80771 IMAGE:5512777), complete cds
          Length = 3361

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 66   gaactcatagcagcattcagagaa 89
            ||||| ||||||||||||||||||
Sbjct: 1829 gaactaatagcagcattcagagaa 1852

>gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA
          clone IMAGE:4682613), partial cds
          Length = 1593

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 66 gaactcatagcagcattcagagaa 89
          ||||| ||||||||||||||||||
Sbjct: 67 gaactaatagcagcattcagagaa 90

>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence
          Length = 131133

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    atgaaaaaagatatgtacagaaaa 55
             ||||||||||||||||| ||||||
Sbjct: 74940 atgaaaaaagatatgtatagaaaa 74917

>gb|AC007297.23| Homo sapiens 12 BAC RP11-690J15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 187737

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ccagagtgtaacttttgtgc 23
             ||||||||||||||||||||
Sbjct: 95647 ccagagtgtaacttttgtgc 95666

>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence
          Length = 40487

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    cagcattcagagaacaaaag 95
             ||||||||||||||||||||
Sbjct: 11828 cagcattcagagaacaaaag 11809

>gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Lawrence Livermore X library)
            complete sequence
          Length = 16699

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  tcagccaggtggtcggcttc 239
            ||||||||||||||||||||
Sbjct: 8656 tcagccaggtggtcggcttc 8675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,920,095
Number of Sequences: 3902068
Number of extensions: 2920095
Number of successful extensions: 61231
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61146
Number of HSP's gapped (non-prelim): 85
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)