ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55b06 |
|---|---|
| Clone Library Name | barley_pub |
>GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphodiesterase 1| precursor (EC 3.1.4.46) Length = 766 Score = 36.6 bits (83), Expect = 0.016 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = -2 Query: 339 LPPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPVS---NTTGPAPSHAASR 175 +P Q GLL ++ PV TD+DV EPPLPPVS TT P P + Sbjct: 683 IPVQPAGLLTIV-SPASLPPAEAPSPVFTDADVTEPPLPPVSARAPTTTPGPQSTGEK 739
>MOSA_MAIZE (P15268) Autonomous transposable element EN-1 mosaic protein| (Suppressor-mutator system protein) (SPM) Length = 621 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +2 Query: 26 HHPQILVQPNQKEK*IARYIEQVAEKNGPQS 118 +HP+IL N EK +ARYI+ V EKNGP + Sbjct: 363 NHPEILNDSNATEK-LARYIDNVREKNGPDT 392
>GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphodiesterase 2| precursor (EC 3.1.4.46) Length = 759 Score = 33.1 bits (74), Expect = 0.18 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = -2 Query: 336 PPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPVSNTTGPAPSHAASRIRTDA 160 P Q G LL ++ PV TD+DV EPPLPPV T AP+ + T+A Sbjct: 677 PAQPGALLTLV-SPTAFPPAEAPNPVFTDADVTEPPLPPV---TAKAPTSSPGTPSTNA 731
>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1| (Transducer of regulated cAMP response element-binding protein 1) (Transducer of CREB protein 1) Length = 634 Score = 31.2 bits (69), Expect = 0.67 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -1 Query: 280 SNGPNAGVDGLGRGGAAPSSCEQHHRSGALPRRLQNTHGRRRDAA 146 +N + G+ G G+G + P S QH +G P L +T RR+ A+ Sbjct: 283 ANLTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSL-STEARRQQAS 326
>CTF1_RAT (Q63086) Cardiotrophin-1 (CT-1)| Length = 203 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%) Frame = -2 Query: 234 PPLPPVSNTTGPAPSHA----ASRIRTDAGVM 151 PP P++ +GPAPSHA + R+R DA + Sbjct: 63 PPRLPLAGLSGPAPSHAGLPVSERLRQDAAAL 94
>CTF1_MOUSE (Q60753) Cardiotrophin-1 (CT-1)| Length = 203 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%) Frame = -2 Query: 234 PPLPPVSNTTGPAPSHA----ASRIRTDAGVM 151 PP P++ +GPAPSHA + R+R DA + Sbjct: 63 PPRLPLAGLSGPAPSHAGLPVSERLRQDAAAL 94
>MRG15_DROME (Q9Y0I1) Protein MRG15| Length = 424 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -2 Query: 258 LTDSDVAEPPLPPVSN----TTGPAP 193 LT SDVAE PLPP + TT PAP Sbjct: 217 LTGSDVAEKPLPPTTTPSTPTTEPAP 242
>MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated protein 1 homolog| Length = 630 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = -1 Query: 295 SSIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGALPRRLQNTHGRRRDA 149 SS +T + + GV G G+G PSS QH + P L +T RR+ A Sbjct: 274 SSSSTGSLAHLGVGGAGQGMNTPSSSPQHRPAVVSPLSL-STEARRQQA 321
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = +2 Query: 110 PQSQISREAHSTSSITPASVRILEAAWEGAGPVVLLTGGRGGSATSESV 256 PQ R + T S TP++ R+ GAG V GG G S++SE V Sbjct: 1092 PQGCRRRHSSETFSSTPSATRVGNTVPFGAGAAV--GGGGGSSSSSEDV 1138
>CY551_CHLVI (P42426) Photosynthetic reaction center cytochrome c-551| (Cytochrome c551) Length = 206 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 4/37 (10%) Frame = -2 Query: 219 VSNTTG--PAPSHAA--SRIRTDAGVMLLVLCASLLI 121 VS TG PAP+H+A + +R+ G LL+ CASL+I Sbjct: 27 VSFLTGYSPAPNHSAILTPLRSFMGWFLLIFCASLII 63
>VATC_METTH (O27038) V-type ATP synthase subunit C (EC 3.6.3.14) (V-type ATPase| subunit C) Length = 385 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = +2 Query: 74 ARYIEQVAEKNGPQSQISREAHSTSSITPASVRILEAA----WEGAGPVVLLTGGRGGSA 241 A+YI++ + +SQ++ S I PAS+R A W+ L+T G + Sbjct: 92 AKYIDRFPIEKALESQLAETYEMVSQIAPASIRDPFRANLKRWDVRNIKSLITAKAAGLS 151 Query: 242 TSESVN 259 E+VN Sbjct: 152 AEETVN 157
>NTP2_VARV (P33051) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +2 Query: 146 SSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 +S+TP + R + +AW PVV LTGG G TS+ Sbjct: 161 ASLTPKAQREIFSAWISHRPVV-LTGGTGVGKTSQ 194
>NTP2_VACCV (P12927) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +2 Query: 146 SSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 +S+TP + R + +AW PVV LTGG G TS+ Sbjct: 161 ASLTPKAQREIFSAWISHRPVV-LTGGTGVGKTSQ 194
>NTP2_VACCT (Q9JFC3) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +2 Query: 146 SSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 +S+TP + R + +AW PVV LTGG G TS+ Sbjct: 161 ASLTPKAQREIFSAWISHRPVV-LTGGTGVGKTSQ 194
>NTP2_VACCC (P20502) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +2 Query: 146 SSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 +S+TP + R + +AW PVV LTGG G TS+ Sbjct: 161 ASLTPKAQREIFSAWISHRPVV-LTGGTGVGKTSQ 194
>NTP2_VACCA (O57193) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +2 Query: 146 SSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 +S+TP + R + +AW PVV LTGG G TS+ Sbjct: 161 ASLTPKAQREIFSAWISHRPVV-LTGGTGVGKTSQ 194
>CTF1_HUMAN (Q16619) Cardiotrophin-1 (CT-1)| Length = 201 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Frame = -2 Query: 234 PPLPPVSNTTGPAPSHAA----SRIRTDAGVM 151 PP PV+ + PAPSHA R+R DA + Sbjct: 63 PPRLPVAGLSAPAPSHAGLPVHERLRLDAAAL 94
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 110 PQSQISREAHSTSSITPASVRILEAAWEGAGPVVLLTGGRGGSATS 247 PQ R + T S TP++ R+ GAG + GG GGS++S Sbjct: 1101 PQGCRRRHSSETFSSTPSATRVGNTVPFGAGAAI---GGSGGSSSS 1143
>WBP4_RAT (Q5HZF2) WW domain-binding protein 4 (WBP-4)| Length = 374 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -2 Query: 249 SDVAEPPLPPVSNTTGPAPS 190 SD++EP + PV+NT P P+ Sbjct: 87 SDISEPTISPVTNTVQPTPT 106
>Y245_SULTO (Q976E1) UPF0210 protein ST0245| Length = 445 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/63 (22%), Positives = 29/63 (46%) Frame = +2 Query: 71 IARYIEQVAEKNGPQSQISREAHSTSSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 +A+Y++++AE+N A + T S+R+L+ + L G ++T Sbjct: 96 LAKYLDRIAERNNIDYISGYSAFADKGFTRGSLRVLKTLTDALNKTKRLAGMINAASTMS 155 Query: 251 SVN 259 +N Sbjct: 156 GMN 158
>FMR1_MOUSE (P35922) Fragile X mental retardation protein 1 homolog (Protein| FMR-1) (FMRP) Length = 614 Score = 28.5 bits (62), Expect = 4.3 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = -1 Query: 274 GPNAGVDGLGRGGAAPSSCEQHHRSGALPRRLQNTHGRRRDAAGAMRFSAYLRLRT 107 G G G GRGG + + H R+ PR + GR D + S RLRT Sbjct: 535 GGGRGQGGRGRGGGFKGN-DDHSRTDNRPRNPREAKGRTADGSLQSASSEGSRLRT 589
>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1574 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 8/41 (19%) Frame = +3 Query: 126 AEKRIAPAASRRRPCV--------FWRRRGRAPDLWCCSQE 224 AE+++ R+PCV WRR G A WC QE Sbjct: 45 AEQKLT-LVGHRQPCVQAFSRIVPVWRRTGCAQQAWCIGQE 84
>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated| protein of 350 kDa) Length = 3117 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 37 NTCTAKPKGKMNRSLHRTGGRKEWSSVSDKQRS 135 ++ + KPK K LHR+ K W S+++ +RS Sbjct: 2126 SSASEKPKIKPLTPLHRSETAKNWKSLTESERS 2158
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 28.1 bits (61), Expect = 5.7 Identities = 24/71 (33%), Positives = 30/71 (42%) Frame = -1 Query: 271 PNAGVDGLGRGGAAPSSCEQHHRSGALPRRLQNTHGRRRDAAGAMRFSAYLRLRTILFCH 92 P+A V G G A P+ SG R GR AG F+ L RT+ F Sbjct: 59 PSAPVPGPGLETAGPADAPSGAVSGGGSPR-----GRSGPVAGPSLFAPLLWERTLPFGD 113 Query: 91 LFYVASDSFFL 59 + YV D+F L Sbjct: 114 VEYVDLDAFLL 124
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 44 VQPNQKEK*IARYIEQVAEKNGPQSQISREAHSTSSITPAS 166 +QP + ++++ A P S ISREA + SS AS Sbjct: 317 LQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAAS 357 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 44 VQPNQKEK*IARYIEQVAEKNGPQSQISREAHSTSSITPAS 166 +QP + ++++ A P S ISREA + SS AS Sbjct: 152 LQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAAS 192
>PMPG_CHLMU (Q9PL45) Probable outer membrane protein pmpG precursor| (Polymorphic membrane protein G) Length = 987 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = +2 Query: 71 IARYIEQVAEKNGPQSQISREAHSTSSITPASVRILEAAWEGAGPVVLLTGGRGGSATSE 250 + + E VA+ +G Q+++ + + P S A +G G + G G AT Sbjct: 196 LCTFQENVAQSDGGACQVTKTFSAVGNKVPLSFLGNVAGNKGGGVAAVKDGQGAGGATDL 255 Query: 251 SVN 259 SVN Sbjct: 256 SVN 258
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -1 Query: 337 ASPARRPPWGHTG*SSIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGALPRR 182 + P+++PP G S+ S GP AG G GRG + H+ G P R Sbjct: 363 SDPSQQPP--SYGGPSVPGSGGPPAGGSGFGRG-------QNHNVQGFHPYR 405
>CASP1_FELCA (Q9MZV6) Caspase-1 precursor (EC 3.4.22.36) (CASP-1) (Interleukin-1| beta convertase) (IL-1BC) (IL-1 beta-converting enzyme) (ICE) (Interleukin-1 beta-converting enzyme) (p45) [Contains: Caspase-1 p20 subunit; Caspase-1 p10 subunit] Length = 410 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%) Frame = -2 Query: 255 TDSDVAEPPLP-PVSNTTGPA 196 TDS+VA PPLP V+N GPA Sbjct: 102 TDSEVAFPPLPASVNNMPGPA 122
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -1 Query: 337 ASPARRPPWGHTG*SSIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGALPRR 182 + P+++PP G S+ S GP AG G GRG + H+ G P R Sbjct: 364 SDPSQQPP--SYGGPSVPGSGGPPAGGSGFGRG-------QNHNVQGFHPYR 406
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 44 VQPNQKEK*IARYIEQVAEKNGPQSQISREAHSTSSITPAS 166 +QP + ++++ A P S ISREA + SS AS Sbjct: 152 LQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAAS 192
>UVRC_CHLCV (Q821V5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 605 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +3 Query: 150 ASRRRPCVFWR-RRGRAPDLWCCSQEE 227 ASRRRPC+ + +R AP + C+ EE Sbjct: 162 ASRRRPCILYEMKRCLAPCVHLCTHEE 188
>K6PF_STRP1 (Q99ZD0) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 337 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/72 (23%), Positives = 35/72 (48%) Frame = +2 Query: 26 HHPQILVQPNQKEK*IARYIEQVAEKNGPQSQISREAHSTSSITPASVRILEAAWEGAGP 205 HH +L + + A+ +++ +K+ +++ H +P + + A+W G+ Sbjct: 216 HHIIVLAEGVMSGEAFAQKLKEAGDKS--DLRVTNLGHILRGGSPTARDRVIASWMGSHA 273 Query: 206 VVLLTGGRGGSA 241 V LL G+GG A Sbjct: 274 VELLKDGKGGLA 285
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -1 Query: 292 SIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGA 194 S A S GP++G D G A P SC RSGA Sbjct: 240 SAAGSPGPSSGGDRPAAGAATPKSC----RSGA 268
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -1 Query: 292 SIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGA 194 S A S GP++G D G A P SC RSGA Sbjct: 240 SAAGSPGPSSGGDRPAAGAATPKSC----RSGA 268
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -1 Query: 292 SIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGA 194 S A S GP++G D G A P SC RSGA Sbjct: 240 SAAGSPGPSSGGDRPAAGAATPKSC----RSGA 268
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = -2 Query: 252 DSDVAEPPLPPVSNTTGPAPSHAASRIRT-----DAGVMLLVLCASLLI 121 +S + PLPP S+ + P SHA + ++ AG++ +C +LI Sbjct: 744 NSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVMLI 792 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,236,085 Number of Sequences: 219361 Number of extensions: 745834 Number of successful extensions: 3431 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3240 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3430 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
