>VIOA_CHRVO (Q9S3V1) Probable L-tryptophan oxidase vioA (EC 1.4.-.-)|
          Length = 418

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 318 LGGAPEVVGVKDNVPNRWFKPETDTPSSIRSIQIEEQA 205
           +G  PE+  V DN  N+WF  ET     I+ I+ + +A
Sbjct: 160 VGKHPEIQSVTDNDANQWFAAETGFAGLIQGIKAKVKA 197

>STRM_STRGR (P29783) dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)|
           (dTDP-4-keto-6-deoxyglucose 3,5-epimerase)
           (dTDP-L-rhamnose synthetase)
          Length = 200

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 238 LHPLDPD*GTS-NEGLQAFLHQREDHEATGLDELPWNGLDP 119
           +HPLDPD G +  +G++  L ++ D +A G+ E+   GL P
Sbjct: 143 VHPLDPDLGIAWPDGIEPVLSEK-DRQAPGIAEMERRGLLP 182

>MEL_ZYGMR (Q9P4V4) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)|
           (Alpha-D-galactoside galactohydrolase) (MELr)
          Length = 470

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 191 LKSFIACSSIWIERMEDGVSVSGLNQRLGTLSFTPTTSGAPPRDGMAKPDVRVFG 355
           L S  A   +W  RMED V+   LN    +      ++      G+A+ D R+FG
Sbjct: 387 LNSTWAVYDLWANRMEDSVASDILNGNRSSNGLLYNSTQQSYSQGLARNDSRLFG 441

>FXR1_MOUSE (Q61584) Fragile X mental retardation syndrome-related protein 1|
          Length = 677

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 273 NRWFKPETDTPSSIRSIQIEEQAMKDFKRFYTSVRI 166
           N +FK   D P  +R     E A KDFK+   + RI
Sbjct: 124 NTFFKCTVDVPEDLREACANENAHKDFKKAVGACRI 159

>NRAM_IATRA (P03472) Neuraminidase (EC 3.2.1.18)|
          Length = 470

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 306 PEVVGVKDNVPNRWFKPETDTPSSIRSIQIEEQAMKDF 193
           PE       + N ++     T  S  +IQ+EE+A++DF
Sbjct: 48  PEATNASQTIINNYYNDTNITQISNTNIQVEERAIRDF 85

>MEL_SACPS (Q03647) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)|
           (Alpha-D-galactoside galactohydrolase) (MELx)
          Length = 471

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 218 IWIERMEDGVSVSGLNQRLGTLSFTPTTSGAPPRDGMAKPDVRVFG 355
           +W  R+++  S + LN      +     +    +DGMAK D R+FG
Sbjct: 396 LWANRVDNATSANILNNNSVGNATIYNATALSYKDGMAKNDTRLFG 441

>FXR1_HUMAN (P51114) Fragile X mental retardation syndrome-related protein 1|
          Length = 621

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 273 NRWFKPETDTPSSIRSIQIEEQAMKDFKRFYTSVRI 166
           N +FK   D P  +R     E A KDFK+   + RI
Sbjct: 124 NTFFKCTVDVPEDLREACANENAHKDFKKAVGACRI 159

>FXR1_CRIGR (O70523) Fragile X mental retardation syndrome-related protein 1|
          Length = 621

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 273 NRWFKPETDTPSSIRSIQIEEQAMKDFKRFYTSVRI 166
           N +FK   D P  +R     E A KDFK+   + RI
Sbjct: 124 NTFFKCTVDVPEDLREACANENAHKDFKKAVGACRI 159

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 76  WNGRDKPKQDDQLFRDRGHSTAVHLNLWLHDPHAG 180
           W+ RD  + DD++ R+ GH    H     H P AG
Sbjct: 84  WSHRDHGETDDEVSREYGHQPQGHR---YHSPEAG 115

>IKKA_HUMAN (O15111) Inhibitor of nuclear factor kappa-B kinase alpha subunit|
           (EC 2.7.11.10) (I kappa-B kinase alpha) (IkBKA)
           (IKK-alpha) (IKK-A) (IkappaB kinase) (I-kappa-B kinase
           1) (IKK1) (Conserved helix-loop-helix ubiquitous kinase)
           (Nuclear factor N
          Length = 745

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -2

Query: 255 ETDTPSSIRSIQIEEQAMKDFKRFYTSVRIMKPQV*MNCRGMASIPEELVILFRLVPPVP 76
           E D   +I+S ++E  + K+ +R+   ++IMK     N      +PEEL IL   VP + 
Sbjct: 36  ELDLKIAIKSCRLE-LSTKNRERWCHEIQIMKKLNHANVVKACDVPEELNILIHDVPLLA 94

Query: 75  M 73
           M
Sbjct: 95  M 95

>RPOA_EUGAN (Q8SL94) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 207

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +2

Query: 92  SLNKMTNSSGIEAIPRQFI*TCGFMILTLV*KRLKSFIACSSI-----WIERMEDGVSVS 256
           SLN+ TN   I     + I     + + LV K LK  I C ++     + + +   + +S
Sbjct: 71  SLNEFTNIEEISEKTNEIIKNLERLKIKLVNKNLKKKIICITLTKENSFFKEIYKTIKIS 130

Query: 257 GLNQRLGTL 283
            LNQ++ T+
Sbjct: 131 NLNQKICTI 139

>KI59C_DROME (Q9W1U4) Kinesin-like protein Klp59C (Kinesin-like protein at|
           cytological position 59C)
          Length = 626

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 245 VSVSGLNQRLGTLSFTPTTSGAPPRDGMAKP 337
           +S   + QR+ T S +P  + APPR   A P
Sbjct: 82  ISPRSMKQRIATGSLSPVLATAPPRQQTAPP 112

>MEL6_YEAST (P41947) Alpha-galactosidase 6 precursor (EC 3.2.1.22) (Melibiase|
           6) (Alpha-D-galactoside galactohydrolase 6)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 185 KRLKSFIACSSIWIERMEDGVSVSGLNQRLGTLSFTPTTSGAPPRDGMAKPDVRVFG 355
           K L S      +W  R+++  + + L Q           +    +DG++K D R+FG
Sbjct: 385 KELTSTWDIYDLWANRVDNSTASAILEQNKAATGILYNATEQSYKDGLSKNDTRLFG 441

>MEL5_YEAST (P41946) Alpha-galactosidase 5 precursor (EC 3.2.1.22) (Melibiase|
           5) (Alpha-D-galactoside galactohydrolase 5)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 185 KRLKSFIACSSIWIERMEDGVSVSGLNQRLGTLSFTPTTSGAPPRDGMAKPDVRVFG 355
           K L S      +W  R+++  + + L Q           +    +DG++K D R+FG
Sbjct: 385 KELTSTWDIYDLWANRVDNSTASAILEQNKAATGILYNATEQSYKDGLSKNDTRLFG 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,095,935
Number of Sequences: 219361
Number of extensions: 1179785
Number of successful extensions: 3038
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3038
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)