>gb|BT018953.1| Zea mays clone Contig145.F mRNA sequence
          Length = 1561

 Score =  127 bits (64), Expect = 3e-26
 Identities = 121/140 (86%)
 Strand = Plus / Minus

                                                                        
Query: 152  acctgtggcttcatgatcctcacgctggtgtaaaaacgcttgaagtccttcattgcttgt 211
            ||||| ||||| | ||||||||||||| |||| || ||| ||||||||||||| || || 
Sbjct: 1394 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 1335

                                                                        
Query: 212  tcctcaatctggatcgagcggatggaggacggggtgtcagtctctggcttaaaccagcgg 271
            ||||| |||||||| ||||||||||||||||||| ||| ||||| ||| | ||||| |||
Sbjct: 1334 tcctcgatctggatggagcggatggaggacggggcgtcggtctccggcctgaaccaccgg 1275

                                
Query: 272  ttgggtacgttgtccttcac 291
            ||||| ||||||||||||||
Sbjct: 1274 ttgggcacgttgtccttcac 1255

>gb|AY105413.1| Zea mays PCO145509 mRNA sequence
          Length = 1892

 Score =  127 bits (64), Expect = 3e-26
 Identities = 121/140 (86%)
 Strand = Plus / Minus

                                                                        
Query: 152  acctgtggcttcatgatcctcacgctggtgtaaaaacgcttgaagtccttcattgcttgt 211
            ||||| ||||| | ||||||||||||| |||| || ||| ||||||||||||| || || 
Sbjct: 1477 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 1418

                                                                        
Query: 212  tcctcaatctggatcgagcggatggaggacggggtgtcagtctctggcttaaaccagcgg 271
            ||||| |||||||| ||||||||||||||||||| ||| ||||| ||| | ||||| |||
Sbjct: 1417 tcctcgatctggatggagcggatggaggacggggcgtcggtctccggcctgaaccaccgg 1358

                                
Query: 272  ttgggtacgttgtccttcac 291
            ||||| ||||||||||||||
Sbjct: 1357 ttgggcacgttgtccttcac 1338

>ref|NM_186453.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3222

 Score =  115 bits (58), Expect = 1e-22
 Identities = 172/210 (81%)
 Strand = Plus / Minus

                                                                        
Query: 152  acctgtggcttcatgatcctcacgctggtgtaaaaacgcttgaagtccttcattgcttgt 211
            ||||||||||| |  ||||||||| || | || || ||||||||||||||||| || || 
Sbjct: 3215 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 3156

                                                                        
Query: 212  tcctcaatctggatcgagcggatggaggacggggtgtcagtctctggcttaaaccagcgg 271
            || ||||||||||||||||| || |||||||| | ||| | ||||||||| |||||||||
Sbjct: 3155 tcttcaatctggatcgagcgaatcgaggacggagcgtcggcctctggcttgaaccagcgg 3096

                                                                        
Query: 272  ttgggtacgttgtccttcacaccaacaacttctggcgctccgcccagggatggtatggca 331
            ||||| || |||||||| |  ||| |||| || || | |  |||| |||| ||||| || 
Sbjct: 3095 ttgggaacattgtccttgatgccaccaacctcaggtgatgtgccctgggaaggtatagcg 3036

                                          
Query: 332  aagcctgatgtccgggttttcggactgtgg 361
            ||||| ||||||| |||||| |||||||||
Sbjct: 3035 aagcccgatgtcctggtttttggactgtgg 3006

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  115 bits (58), Expect = 1e-22
 Identities = 172/210 (81%)
 Strand = Plus / Plus

                                                                           
Query: 152     acctgtggcttcatgatcctcacgctggtgtaaaaacgcttgaagtccttcattgcttgt 211
               ||||||||||| |  ||||||||| || | || || ||||||||||||||||| || || 
Sbjct: 3524605 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 3524664

                                                                           
Query: 212     tcctcaatctggatcgagcggatggaggacggggtgtcagtctctggcttaaaccagcgg 271
               || ||||||||||||||||| || |||||||| | ||| | ||||||||| |||||||||
Sbjct: 3524665 tcttcaatctggatcgagcgaatcgaggacggagcgtcggcctctggcttgaaccagcgg 3524724

                                                                           
Query: 272     ttgggtacgttgtccttcacaccaacaacttctggcgctccgcccagggatggtatggca 331
               ||||| || |||||||| |  ||| |||| || || | |  |||| |||| ||||| || 
Sbjct: 3524725 ttgggaacattgtccttgatgccaccaacctcaggtgatgtgccctgggaaggtatagcg 3524784

                                             
Query: 332     aagcctgatgtccgggttttcggactgtgg 361
               ||||| ||||||| |||||| |||||||||
Sbjct: 3524785 aagcccgatgtcctggtttttggactgtgg 3524814



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 48      gaaactgactgtacacttgaatgtacattg 77
               ||||||||||||||| ||||||||||||||
Sbjct: 3524494 gaaactgactgtacatttgaatgtacattg 3524523

>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score =  115 bits (58), Expect = 1e-22
 Identities = 172/210 (81%)
 Strand = Plus / Plus

                                                                         
Query: 152   acctgtggcttcatgatcctcacgctggtgtaaaaacgcttgaagtccttcattgcttgt 211
             ||||||||||| |  ||||||||| || | || || ||||||||||||||||| || || 
Sbjct: 62555 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 62614

                                                                         
Query: 212   tcctcaatctggatcgagcggatggaggacggggtgtcagtctctggcttaaaccagcgg 271
             || ||||||||||||||||| || |||||||| | ||| | ||||||||| |||||||||
Sbjct: 62615 tcttcaatctggatcgagcgaatcgaggacggagcgtcggcctctggcttgaaccagcgg 62674

                                                                         
Query: 272   ttgggtacgttgtccttcacaccaacaacttctggcgctccgcccagggatggtatggca 331
             ||||| || |||||||| |  ||| |||| || || | |  |||| |||| ||||| || 
Sbjct: 62675 ttgggaacattgtccttgatgccaccaacctcaggtgatgtgccctgggaaggtatagcg 62734

                                           
Query: 332   aagcctgatgtccgggttttcggactgtgg 361
             ||||| ||||||| |||||| |||||||||
Sbjct: 62735 aagcccgatgtcctggtttttggactgtgg 62764



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 48    gaaactgactgtacacttgaatgtacattg 77
             ||||||||||||||| ||||||||||||||
Sbjct: 62444 gaaactgactgtacatttgaatgtacattg 62473

>gb|BT017710.1| Zea mays clone EL01N0446C12.c mRNA sequence
          Length = 768

 Score =  111 bits (56), Expect = 2e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                       
Query: 152 acctgtggcttcatgatcctcacgctggtgtaaaaacgcttgaagtccttcattgcttgt 211
           ||||| ||||| | ||||||||||||| |||| || ||| ||||||||||||| || || 
Sbjct: 295 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 236

                                                                       
Query: 212 tcctcaatctggatcgagcggatggaggacggggtgtcagtctctggcttaaaccagcgg 271
           ||||| |||||||| ||||||||||||||||||| ||| ||||| ||| | ||||| |||
Sbjct: 235 tcctcgatctggatggagcggatggaggacggggcgtcggtctccggcctgaaccaccgg 176

                               
Query: 272 ttgggtacgttgtccttcac 291
             ||| ||||||||||||||
Sbjct: 175 ccgggcacgttgtccttcac 156

>gb|AF483762.1| Bos taurus clone UMN0705 microsatellite sequence
          Length = 494

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 320 gatggtatggcaaagcctgatg 341
           ||||||||||||||||||||||
Sbjct: 292 gatggtatggcaaagcctgatg 313

>gb|AY347578.1| Bos taurus TSPY-M2 pseudogene, complete sequence
          Length = 3332

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 320  gatggtatggcaaagcctgatg 341
            ||||||||||||||||||||||
Sbjct: 1262 gatggtatggcaaagcctgatg 1283

>ref|NG_004816.1| Bos taurus TSPY-M2 pseudogene (TSPY-M2)
          Length = 3332

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 320  gatggtatggcaaagcctgatg 341
            ||||||||||||||||||||||
Sbjct: 1262 gatggtatggcaaagcctgatg 1283

>gb|AC024361.21| Homo sapiens chromosome 17, clone RP11-388C12, complete sequence
          Length = 111473

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    gacaagcctaaacaagatgac 108
             |||||||||||||||||||||
Sbjct: 53120 gacaagcctaaacaagatgac 53100

>gb|AC068014.16| Homo sapiens chromosome 17, clone RP11-567O16, complete sequence
          Length = 148509

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     gacaagcctaaacaagatgac 108
              |||||||||||||||||||||
Sbjct: 120498 gacaagcctaaacaagatgac 120518

>gb|AC132453.3| Mus musculus BAC clone RP23-200J18 from 6, complete sequence
          Length = 206248

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    cgaggccattccacggcagtt 144
              |||||||||||||||||||||
Sbjct: 127718 cgaggccattccacggcagtt 127698

>gb|AC004853.1| Homo sapiens PAC clone RP4-669B10 from 7, complete sequence
          Length = 129355

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    cacttgaatgtacattggaa 80
             ||||||||||||||||||||
Sbjct: 40761 cacttgaatgtacattggaa 40742

>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5'
              end of the BMP6 gene for bone morphogenetic protein 6 and a
              CpG island, complete sequence
          Length = 152786

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     agcctaaacaagatgaccaa 111
              ||||||||||||||||||||
Sbjct: 122505 agcctaaacaagatgaccaa 122486

>emb|AL031733.3|HS455J7 Human DNA sequence from clone RP3-455J7 on chromosome 1q24 Contains
            the 5' end of the CD3Z gene for CD3Z antigen zeta
            polypeptide (TiT3 complex), an aldo-keto reductase family
            1 member D1 (delta 4-3-ketosteroid-5-beta-reductase)
            (AKR1D1) pseudogene, the CREG gene for cellular repressor
            of E1A-stimulated genes, a ribosomal protein S18 (RPS18)
            pseudogene, a novel gene, the 5' end of the gene for a
            novel protein and a CpG island, complete sequence
          Length = 215861

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  tgcttgttcctcaatctgga 224
            ||||||||||||||||||||
Sbjct: 9730 tgcttgttcctcaatctgga 9749

>gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete
             sequence
          Length = 214415

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    cacttgaatgtacattggaa 80
             ||||||||||||||||||||
Sbjct: 18899 cacttgaatgtacattggaa 18880

>dbj|AK130755.1| Homo sapiens cDNA FLJ27245 fis, clone SYN08243
          Length = 2109

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  tgcttgttcctcaatctgga 224
            ||||||||||||||||||||
Sbjct: 2097 tgcttgttcctcaatctgga 2078

>gb|AY104914.1| Zea mays PCO133651 mRNA sequence
          Length = 1441

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  ttggaacgggagggacaagc 94
           ||||||||||||||||||||
Sbjct: 156 ttggaacgggagggacaagc 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,572,386
Number of Sequences: 3902068
Number of extensions: 2572386
Number of successful extensions: 47421
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47382
Number of HSP's gapped (non-prelim): 39
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)