>gb|AC105957.13| Mus musculus chromosome 18, clone RP24-303O20, complete sequence
          Length = 167570

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 188   tctgtgcacttcagttcccact 209
             ||||||||||||||||||||||
Sbjct: 76667 tctgtgcacttcagttcccact 76646

>ref|XM_640613.1| Dictyostelium discoideum hypothetical protein (DDB0216808), partial
            mRNA
          Length = 5625

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 12   aatttgtccattattaattaa 32
            |||||||||||||||||||||
Sbjct: 1116 aatttgtccattattaattaa 1136

>gb|DQ353311.1| Proformica nasuta voucher RA0388 cytochrome oxidase subunit I
          (COI) gene, partial cds; mitochondrial
          Length = 1035

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 12 aatttgtccattattaattaatgaa 36
          ||||||| |||||||||||||||||
Sbjct: 93 aatttgttcattattaattaatgaa 69

>gb|AC158153.3| Mus musculus chromosome 5, clone RP23-119B3, complete sequence
          Length = 196824

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  ccatctaccatcatcaccatc 231
            |||||||||||||||||||||
Sbjct: 2894 ccatctaccatcatcaccatc 2914

>dbj|AP006547.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KPchr8gap13, complete
             sequence
          Length = 17935

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   cccatctaccatcatcaccat 230
             |||||||||||||||||||||
Sbjct: 13564 cccatctaccatcatcaccat 13584

>gb|AC101857.12| Mus musculus chromosome 5, clone RP23-304E8, complete sequence
          Length = 167722

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    ccatctaccatcatcaccatc 231
              |||||||||||||||||||||
Sbjct: 107143 ccatctaccatcatcaccatc 107163

>gb|AF110520.1|MMHC425O18 Mus musculus major histocompatibility complex region NG27, NG28, RPS28,
             NADH oxidoreductase, NG29, KIFC1, Fas-binding protein,
             BING1, tapasin, RalGDS-like, KE2, BING4, beta
             1,3-galactosyl transferase, and RPS18 genes, complete cds;
             Sacm21 gene, partial cds; and unknown gene
          Length = 213245

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gaaacaatagtacaaaagtc 53
             ||||||||||||||||||||
Sbjct: 99948 gaaacaatagtacaaaagtc 99929

>emb|Z79754.1|CEF25H2 Caenorhabditis elegans Cosmid F25H2, complete sequence
          Length = 42366

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    attattaattaatgaaacaa 40
             ||||||||||||||||||||
Sbjct: 13105 attattaattaatgaaacaa 13124

>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence
          Length = 218449

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   tcagttcccactcccatctaccat 221
             ||||||||||||||| ||||||||
Sbjct: 45477 tcagttcccactcccttctaccat 45454

>gb|AC134818.1| Homo sapiens chromosome 5 clone RP11-184G11, complete sequence
          Length = 81872

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   taatgaaacaatagtacaaa 49
            ||||||||||||||||||||
Sbjct: 7893 taatgaaacaatagtacaaa 7874

>gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 176251

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 123  atgcaagtcttcatcatacagttc 146
            ||||||||||||| ||||||||||
Sbjct: 1199 atgcaagtcttcagcatacagttc 1176

>gb|AC092924.7| Homo sapiens 3 BAC RP11-788A4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155417

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    atgcaagtcttcatcatacagttc 146
              ||||||||||||| ||||||||||
Sbjct: 154616 atgcaagtcttcagcatacagttc 154593

>gb|AC113614.4| Homo sapiens BAC clone RP11-559P10 from 4, complete sequence
          Length = 103585

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ctaccatcatcaccatcctt 234
             ||||||||||||||||||||
Sbjct: 15060 ctaccatcatcaccatcctt 15041

>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     attattaattaatgaaacaa 40
              ||||||||||||||||||||
Sbjct: 444649 attattaattaatgaaacaa 444668

>gb|AC090044.3| Homo sapiens chromosome 3 clone RP11-86C13 map 3p, complete sequence
          Length = 189939

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ttaattaatgaaacaatagt 44
              ||||||||||||||||||||
Sbjct: 129704 ttaattaatgaaacaatagt 129723

>gb|AC161625.5| Pan troglodytes BAC clone CH251-98N20 from chromosome unknown, complete
             sequence
          Length = 179977

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ttattaattaatgaaacaat 41
             ||||||||||||||||||||
Sbjct: 62930 ttattaattaatgaaacaat 62911

>gb|AC009158.7| Homo sapiens chromosome 16 clone RP11-67I10, complete sequence
          Length = 161248

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ttattaattaatgaaacaat 41
              ||||||||||||||||||||
Sbjct: 116146 ttattaattaatgaaacaat 116127

>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8,
             complete sequence
          Length = 209195

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    tattaattaatgaaacaata 42
             ||||||||||||||||||||
Sbjct: 48060 tattaattaatgaaacaata 48041

>gb|AC133134.2| Homo sapiens chromosome 5 clone RP11-120B7, complete sequence
          Length = 148711

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     taatgaaacaatagtacaaa 49
              ||||||||||||||||||||
Sbjct: 131432 taatgaaacaatagtacaaa 131413

>emb|CT030732.13| Mouse DNA sequence from clone RP23-27D5 on chromosome 17, complete
              sequence
          Length = 220163

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     gaaacaatagtacaaaagtc 53
              ||||||||||||||||||||
Sbjct: 162516 gaaacaatagtacaaaagtc 162497

>emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chromosome X, complete
              sequence
          Length = 203118

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tattaattaatgaaacaata 42
              ||||||||||||||||||||
Sbjct: 115688 tattaattaatgaaacaata 115669

>emb|AL645535.16| Mouse DNA sequence from clone RP23-145G23 on chromosome 11, complete
              sequence
          Length = 161363

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tctgtgcacttcagttccca 207
              ||||||||||||||||||||
Sbjct: 101015 tctgtgcacttcagttccca 100996

>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete
              sequences
          Length = 173185

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    taccatcatcaccatccttg 235
              ||||||||||||||||||||
Sbjct: 112480 taccatcatcaccatccttg 112461


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,137,129
Number of Sequences: 3902068
Number of extensions: 3137129
Number of successful extensions: 71023
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70970
Number of HSP's gapped (non-prelim): 53
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)