ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF3X_HUMAN (O75153) Putative eukaryotic translation initiation f... 30 2.4

>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1309

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 5   ELWPAIDCKNKFQLIHSNARHYLADSFQTFMFDSRPLPEP 124
           EL  +++CK    +I ++ RHY+ D  +TF  D   LP P
Sbjct: 544 ELCSSVECKG---IIGNDGRHYILDLLRTFPPDLNFLPVP 580


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,082,665
Number of Sequences: 219361
Number of extensions: 249780
Number of successful extensions: 659
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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