Clone Name | rbastl55a09 |
---|---|
Clone Library Name | barley_pub |
>emb|BX538053.1|HSM806224 Homo sapiens genomic DNA; cDNA DKFZp686L04145 (from clone DKFZp686L04145) Length = 3770 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 2887 cattgattgcaaaaataaat 2906
>gb|AC107628.4| Homo sapiens chromosome 8, clone CTD1-2009P10, complete sequence Length = 102718 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 43071 cattgattgcaaaaataaat 43090
>gb|AY048575.1| Xenopus laevis Pax6 gene, promoter and 5'UTR Length = 2603 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 attgattgcaaaaataaatt 39 |||||||||||||||||||| Sbjct: 1488 attgattgcaaaaataaatt 1507
>gb|AC163744.3| Pan troglodytes BAC clone CH251-376E11 from chromosome unknown, complete sequence Length = 195342 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 160142 cattgattgcaaaaataaat 160161
>gb|AC175061.3| Pan troglodytes BAC clone CH251-572M8 from chromosome unknown, complete sequence Length = 191409 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 46979 cattgattgcaaaaataaat 46960
>emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in linkage group 18, complete sequence Length = 117304 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cagacattatttggcagatagctt 84 |||||||||||||||| ||||||| Sbjct: 61196 cagacattatttggcatatagctt 61173
>dbj|AP005367.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB800C8, complete sequence Length = 112111 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 104560 cattgattgcaaaaataaat 104541
>dbj|AP004295.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1907E5 Length = 154597 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 21892 cattgattgcaaaaataaat 21873
>gb|AC109279.13| Mus musculus chromosome 1, clone RP23-333O12, complete sequence Length = 199028 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 attgattgcaaaaataaat 38 ||||||||||||||||||| Sbjct: 130820 attgattgcaaaaataaat 130838
>ref|NM_178753.2| Mus musculus RIKEN cDNA 9630042H07 gene (9630042H07Rik), mRNA Length = 4182 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 2794 tgcaaaaataaattccatttgat 2772
>gb|AC122508.3| Mus musculus BAC clone RP24-427G15 from chromosome 12, complete sequence Length = 169567 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 ttgattgcaaaaataaatt 39 ||||||||||||||||||| Sbjct: 56307 ttgattgcaaaaataaatt 56325
>ref|XM_711371.1| Candida albicans SC5314 hypothetical protein (CaO19_7330), mRNA Length = 714 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 attgattgcaaaaataaat 38 ||||||||||||||||||| Sbjct: 62 attgattgcaaaaataaat 44
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 ccggccattgattgcaaaa 32 ||||||||||||||||||| Sbjct: 1582571 ccggccattgattgcaaaa 1582589
>ref|XM_455439.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F07931g predicted mRNA Length = 1473 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 aaattccagttgatccaca 53 ||||||||||||||||||| Sbjct: 1362 aaattccagttgatccaca 1344
>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds Length = 590284 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 aaaaataaattccagttga 47 ||||||||||||||||||| Sbjct: 234679 aaaaataaattccagttga 234661
>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence Length = 260989 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ttgattgcaaaaataaatt 39 ||||||||||||||||||| Sbjct: 134909 ttgattgcaaaaataaatt 134891
>emb|CT025636.2| Pan troglodytes chromosome X clone RP43-029M22 map Xq28, complete sequence Length = 176404 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 aaaaataaattccagttga 47 ||||||||||||||||||| Sbjct: 61973 aaaaataaattccagttga 61991
>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22, complete sequence Length = 147994 Score = 38.2 bits (19), Expect = 6.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 61 cagacattatttggcagatagctttca 87 ||||||||||||| |||| |||||||| Sbjct: 65270 cagacattatttgacagaaagctttca 65244
>gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-like protein gene, partial cds; phycocyanobilin:ferredoxin oxidoreductase-like protein, DevB (devB), DevC (devC), tRNA pseudoridine 55 synthase, CheY (cheY), 50S ribosomal protein L27, 50S ribosomal protein L21, KaiA (kaiA), KaiB (kaiB), KaiC (kaiC), glutathione peroxidase, virulence associated protein C, rRNA methylase-like protein, PhdD (phdD), indole-3-glycerol phosphate synthase-like protein, PdxJ (pdxJ), KguA (kguA), AmpA (ampA), MobA (mobA), transferrin variant A-like protein, 6-pyruvoyl-tetrahydropterin synthase-like protein, NugC (nugC), NdhK (ndhK), Nu3C (nu3C), RubR (rubR), PsbE (psbE), PsbF (psbF), PsbL (psbL), PsbJ (psbJ), apolipoprotein N-acyltransferase-like protein, unknown protein, IspF (ispF), Ap-4-A phosphorylase II-like protein, PanC (panC), Kcy (kcy), and dTDP-glucose 4-6-dehydratase-like protein genes, complete cds; and unknown genes Length = 74355 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ggcagatagctttcaaacg 91 ||||||||||||||||||| Sbjct: 41800 ggcagatagctttcaaacg 41818
>emb|AL603752.6| Human DNA sequence from clone RP11-296A1 on chromosome 1 Contains part of the ESRRG gene for estrogen-related receptor gamma, complete sequence Length = 48868 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 aaaaataaattccagttga 47 ||||||||||||||||||| Sbjct: 38671 aaaaataaattccagttga 38689
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 aaattccagttgatccaca 53 ||||||||||||||||||| Sbjct: 745518 aaattccagttgatccaca 745500
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 gatccacagcaacgccaga 64 ||||||||||||||||||| Sbjct: 1659538 gatccacagcaacgccaga 1659556
>emb|AL929071.6| Mouse DNA sequence from clone RP24-450M24 on chromosome 11 Contains the gene for a novel solute carrier family 13 (sodium-dependent dicarboxylate transporter) (Slc13a2 or 3) member, a novel gene, the gene for a novel TRAF-type zinc finger protein, the gene for a novel F-box domain containing protein, the Tekt1 gene for tektin 1 and a CpG island, complete sequence Length = 154561 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 ttcatgtttgattctagac 110 ||||||||||||||||||| Sbjct: 114240 ttcatgtttgattctagac 114222
>gb|AC104967.4| Homo sapiens chromosome 8, clone CTD-2306F16, complete sequence Length = 144098 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 attgcaaaaataaattccagttg 46 ||||||| ||||||||||||||| Sbjct: 101470 attgcaagaataaattccagttg 101492
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ggcagatagctttcaaacg 91 ||||||||||||||||||| Sbjct: 414923 ggcagatagctttcaaacg 414941
>dbj|AK147852.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270069D24 product:Similar to spindlin (Ovarian cancer-related protein), full insert sequence Length = 3851 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 2753 tgcaaaaataaattccatttgat 2731
>gb|AC008942.6| Homo sapiens chromosome 5 clone CTD-2320O4, complete sequence Length = 148917 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaa 37 ||||||||||||||||||| Sbjct: 101167 cattgattgcaaaaataaa 101185
>gb|AC025472.4| Homo sapiens chromosome 5 clone RP11-15G6, complete sequence Length = 171744 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 acattatttggcagatagc 82 ||||||||||||||||||| Sbjct: 168331 acattatttggcagatagc 168313
>dbj|AK036158.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630042H07 product:similar to SPINDLIN [Gallus gallus], full insert sequence Length = 4182 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 2794 tgcaaaaataaattccatttgat 2772
>gb|AC034231.6|AC034231 Homo sapiens chromosome 5 clone CTD-2203K17, complete sequence Length = 34136 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 acattatttggcagatagc 82 ||||||||||||||||||| Sbjct: 1363 acattatttggcagatagc 1345
>dbj|AK047896.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130020H17 product:similar to SPINDLIN [Gallus gallus], full insert sequence Length = 3885 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 2748 tgcaaaaataaattccatttgat 2726
>dbj|AK033181.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030454E18 product:unclassifiable, full insert sequence Length = 3199 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 2103 tgcaaaaataaattccatttgat 2081
>gb|AC074270.25|AC074270 Homo sapiens 12 BAC RP11-84G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 140597 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 caaaaataaattccagttg 46 ||||||||||||||||||| Sbjct: 99355 caaaaataaattccagttg 99373
>gb|AC171141.2| Helobdella robusta clone CH306-1B3, complete sequence Length = 94001 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ttgattgcaaaaataaatt 39 ||||||||||||||||||| Sbjct: 78551 ttgattgcaaaaataaatt 78533
>emb|BX470092.12| Mouse DNA sequence from clone RP23-230K20 on chromosome X, complete sequence Length = 95593 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 55908 tgcaaaaataaattccatttgat 55930
>gb|AC006445.11|AC006445 Homo sapiens chromosome 4 clone C0367I21, complete sequence Length = 174547 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 aaaaataaattccagttga 47 ||||||||||||||||||| Sbjct: 162509 aaaaataaattccagttga 162491
>gb|BC027796.1| Mus musculus RIKEN cDNA 9630042H07 gene, mRNA (cDNA clone MGC:38206 IMAGE:5323183), complete cds Length = 3912 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tgcaaaaataaattccagttgat 48 ||||||||||||||||| ||||| Sbjct: 2753 tgcaaaaataaattccatttgat 2731
>emb|BX321898.29| Zebrafish DNA sequence from clone DKEYP-34C12 in linkage group 22, complete sequence Length = 195042 Score = 38.2 bits (19), Expect = 6.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 61 cagacattatttggcagatagctttca 87 ||||||||||||| |||| |||||||| Sbjct: 130992 cagacattatttgacagaaagctttca 131018
>gb|U73479.1|U73479 Homo sapiens cosmid clone U138C3 from Xp22.1-22.2, complete sequence Length = 36029 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 aaaaataaattccagttga 47 ||||||||||||||||||| Sbjct: 18177 aaaaataaattccagttga 18195
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ggcagatagctttcaaacg 91 ||||||||||||||||||| Sbjct: 1205882 ggcagatagctttcaaacg 1205864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,380,338 Number of Sequences: 3902068 Number of extensions: 1380338 Number of successful extensions: 91019 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90866 Number of HSP's gapped (non-prelim): 153 length of query: 137 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 116 effective length of database: 17,151,101,840 effective search space: 1989527813440 effective search space used: 1989527813440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)