>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 230  WASCEVAFETVPSKCQLL*XXXX*VDCTTGCFSMGAC 120
            + SC  AF T  S CQ+        + TTGC ++G+C
Sbjct: 2340 YTSCADAFYTTHSDCQIA-SSKCTTNGTTGCIALGSC 2375

>G156_PARPR (P13837) G surface protein, allelic form 156 precursor|
          Length = 2715

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 230  WASCEVAFETVPSKCQLL*XXXX*VDCTTGCFSMGAC 120
            + SC  AF T  S CQ+        + TTGC ++G+C
Sbjct: 2351 YTSCADAFYTTHSDCQIA-SSKCTTNGTTGCIALGSC 2386

>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 103  PKQRNPQAPIEKQPV-----VQSTQQQHHYNNWHFDGTVSKATSH 222
            P+Q+N Q  +++Q V     +Q  QQQ H+ +       S A+SH
Sbjct: 1128 PQQQNMQQSVQQQSVQQQQSLQQQQQQQHHQHHSNSSASSNASSH 1172

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 24.6 bits (52), Expect(2) = 3.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 86  SRFSHGQNRGTHRPPLRNNQLYNQLNSNIITTIGISMERFRKPLHMMPKAISTSD 250
           +R + G+N   HRPPL+   + N +      T  +S+   + P  +  +   T D
Sbjct: 13  ARQTLGKNVAVHRPPLKLGNMTNWIQQQQAQT-NLSLSNTKAPGSLDERLFLTED 66



 Score = 22.3 bits (46), Expect(2) = 3.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 264 PGMQKERSVHH*TPSRSRVFLQLHPQTLSSYVSSALVDAE 383
           PG    R V +  P+ S     L P +LSS   S   D +
Sbjct: 92  PGKSLHRFVDNLNPNSSHFSASLLPASLSSLCDSTCGDVD 131

>ARHGC_HUMAN (Q9NZN5) Rho guanine nucleotide exchange factor 12|
            (Leukemia-associated RhoGEF)
          Length = 1544

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 127  PIEKQPVVQST-QQQHHYNNWHFDGTVSKAT 216
            P+   P V+ST QQQH   N H DG +S  T
Sbjct: 1441 PMTGIPAVESTHQQQHSPQNTHSDGAISPFT 1471

>CLCC_ARATH (Q96282) Chloride channel protein CLC-c (AtCLC-c)|
          Length = 779

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 146 LYNQLNSNIITTIGISME---RFRKPLHMMPKAISTSDAYNSPWHAEGEVCP 292
           LYN L   ++ T  I  E   RF+  L M    +S+  A+  PW ++   CP
Sbjct: 356 LYNYLVDKVLRTYSIINEKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCP 407

>SYW_BACAN (Q81TS6) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 329

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 228 PKLSAQVMLITRPGMQKERSVHH*TPSRSRVFLQLHPQTLSSYVSSALVDAE 383
           PK+ A+VM +T P  +  +S  +    +S + +   P+T+   + SA+ D+E
Sbjct: 177 PKVGARVMSLTEPTKKMSKSDPN---PKSMISMLDEPKTIEKKIKSAVTDSE 225

>ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet membrane|
           glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen)
           [Contains: Integrin alpha-IIb heavy chain; Integrin
           alpha-IIb light chain]
          Length = 1039

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 212 PLHMMPKAISTSDAYNSPWHAEGEVCPSL 298
           P  + P    T   +  PW AEG  CPSL
Sbjct: 71  PRTLGPSQEETGGVFLCPWRAEGGQCPSL 99

>VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21|
          Length = 1467

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 106  KQRNPQAPIEKQPVVQSTQQQHH 174
            +Q+ PQ P  +QP  Q  QQQ H
Sbjct: 1223 RQQQPQPPQHQQPQAQQAQQQFH 1245

>HRK1_YEAST (Q08732) Serine/threonine-protein kinase HRK1 (EC 2.7.11.1)|
           (Hygromycin resistance kinase 1)
          Length = 759

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 103 PKQRNPQAPIEKQPVVQSTQQQHHYNNWHFDGTVSKATSHDAQSYQHK 246
           P+Q+  Q   ++Q   Q  QQ HH+ + + D   S A S +  S QH+
Sbjct: 627 PQQQQQQQQQQQQQQQQQQQQHHHHQHQNQDKAHSIA-SDNKSSQQHR 673

>RUMB_PHOLL (Q7N6G6) 23S rRNA (uracil-5-)-methyltransferase rumB (EC 2.1.1.-)|
           (23S rRNA(M-5-U747)-methyltransferase)
          Length = 377

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 226 HHVKWLSKPFHRNANCCNDVAVELIVQLVVSQWGP 122
           H  +WL KP+ +          +L+ Q +V QW P
Sbjct: 12  HSCQWLEKPYSQQLEDKQQNLKQLLPQAIVKQWLP 46

>PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1)|
           (Ca(2+)-dependent phospholipid scramblase 1)
           (Erythrocyte phospholipid scramblase) (MmTRA1b)
          Length = 318

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
 Frame = -2

Query: 274 CMPGRVISITCADSFGHHVKWLSKPFHRNANCCNDVAVELIVQ--------LVVSQWGP 122
           C P R  ++   D+ G  V  L +P   ++ CC     E+ +Q         V+  W P
Sbjct: 154 CGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHP 212

>YETS2_MOUSE (Q3TUF7) YEATS domain-containing protein 2|
          Length = 1407

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 267 GMQKERSVHH*TPSRSRVFLQLHPQTLSSYVSSALVDAEQPSFHL 401
           G ++E S++H      +V+  LHP    SY  + LV+  +P FHL
Sbjct: 241 GSRREPSINHFV---KKVWFFLHP----SYKPNDLVEVREPPFHL 278

>YETS2_HUMAN (Q9ULM3) YEATS domain-containing protein 2|
          Length = 1422

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 267 GMQKERSVHH*TPSRSRVFLQLHPQTLSSYVSSALVDAEQPSFHL 401
           G ++E S++H      +V+  LHP    SY  + LV+  +P FHL
Sbjct: 240 GSRREPSINHFV---KKVWFFLHP----SYKPNDLVEVREPPFHL 277

>GLNE_MANSM (Q65T25) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 981

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 77  IQQSRFSHGQNRGTHRPPLRNNQLYNQLNSNIITTIGISMERFRKPLHMMPKAISTSD 250
           I+Q+      N  TH P   N+Q+Y Q+  +I           + P+  + +A+S SD
Sbjct: 8   IEQTLIQLADNLITHFPEQFNSQIYQQIQKDI--------SNIKTPVGALMRAVSMSD 57

>PRAF2_MACFA (Q4R4I9) PRA1 family protein 2|
          Length = 178

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 137 NNQLYNQLNSNIITTIGISMERFRKPLHMMPKAISTSDAYNS-PWHAE 277
           NN LY Q N  +   IG+++  + +PLH +  A+  + A     W AE
Sbjct: 39  NNLLYYQTNYLLCFGIGLALAGYVRPLHTLLSALVVAVALGMLVWAAE 86

>CD81_SAGOE (Q9N0J9) CD81 protein|
          Length = 236

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 238 DSFGHHVKWLSKPFHRNANCCNDVAVE-LIVQLVVSQWGPVGSSVLA 101
           D   ++ K + K FH   NCC    +  L   ++ +   P GSS+++
Sbjct: 137 DDDANNAKAVVKTFHETLNCCGSSTLSALTTSMLKNNLCPSGSSIIS 183

>ACY1_HUMAN (Q03154) Aminoacylase-1 (EC 3.5.1.14) (N-acyl-L-amino-acid|
           amidohydrolase) (ACY-1)
          Length = 408

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 185 GISMERFRKPLHMMPKAISTSDAYNSPWHAEGEVCPSLNTFT*QSVPPASSANVIFLRFL 364
           G+++E  +K +H  P+   T D+ N  W A   VC  +N      + PA++ N  ++R +
Sbjct: 300 GVTLEFAQKWMH--PQVTPTDDS-NPWWAAFSRVCKDMNLTLEPEIMPAATDN-RYIRAV 355

Query: 365 GTCGCG 382
           G    G
Sbjct: 356 GVPALG 361

>LCR81_ARATH (P82790) Putative low-molecular-weight cysteine-rich protein LCR81|
           precursor
          Length = 79

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 155 DCTTGCFSMGACGFLCFGHD*ICSAVSSYMSQCSR 51
           DC T C SMG  G  C G    C+  SS  S  +R
Sbjct: 43  DCDTLCISMGFTGGYCQGLTCCCNPKSSKSSIINR 77

>O1078_RAT (P23265) Olfactory receptor 1078 (Olfactory receptor-like protein|
           F3)
          Length = 333

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 277 FCMPGRVISITCADSF 230
           FC P +VI +TC+D+F
Sbjct: 178 FCEPNQVIQLTCSDAF 193

>REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase regA (EC|
           3.1.4.17) (PDEase regA)
          Length = 793

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 292 ITKHLHVAECSSSFIRKRYLPTFPRHLWMRNS 387
           +TK   V+E SS+  R+  +PTFP+  + R++
Sbjct: 395 VTKSFLVSEFSSTTSRRNSIPTFPQTTYNRDT 426

>PRAF2_HUMAN (O60831) PRA1 family protein 2|
          Length = 178

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 137 NNQLYNQLNSNIITTIGISMERFRKPLHMMPKAISTSDAYN-SPWHAE 277
           NN LY Q N  +   IG+++  + +PLH +  A+  + A     W AE
Sbjct: 39  NNLLYYQTNYLLCFGIGLALAGYVRPLHTLLSALVVAVALGVLVWAAE 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,207,032
Number of Sequences: 219361
Number of extensions: 1117086
Number of successful extensions: 2934
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2927
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)