ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55a07 |
|---|---|
| Clone Library Name | barley_pub |
>SK2L2_MOUSE (Q9CZU3) Superkiller viralicidic activity 2-like 2 (EC 3.6.1.-)| (ATP-dependent helicase SKIV2L2) Length = 1040 Score = 56.2 bits (134), Expect = 3e-08 Identities = 28/53 (52%), Positives = 36/53 (67%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 261 EGSIIR +RRL+E L Q+ AA+A+G LE KF ++R I+FA SLYL Sbjct: 988 EGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040
>SK2L2_HUMAN (P42285) Superkiller viralicidic activity 2-like 2 (EC 3.6.1.-)| (ATP-dependent helicase SKIV2L2) Length = 1042 Score = 56.2 bits (134), Expect = 3e-08 Identities = 28/53 (52%), Positives = 36/53 (67%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 261 EGSIIR +RRL+E L Q+ AA+A+G LE KF ++R I+FA SLYL Sbjct: 990 EGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>YH2O_CAEEL (Q23223) Putative helicase W08D2.7 (EC 3.6.1.-)| Length = 1026 Score = 53.5 bits (127), Expect = 2e-07 Identities = 28/53 (52%), Positives = 39/53 (73%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 261 EGSIIR +RRL+E L ++ AA+A+ LE+KF A ++L+R I+FA SLYL Sbjct: 974 EGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>YE02_SCHPO (O13799) Putative helicase C17H9.02 (EC 3.6.1.-)| Length = 1030 Score = 48.9 bits (115), Expect = 5e-06 Identities = 26/53 (49%), Positives = 34/53 (64%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 261 EGSI+R RRLDE L QL+ AA +G L++K + L R I+F+ SLYL Sbjct: 978 EGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030
>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)| Length = 1117 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/53 (41%), Positives = 35/53 (66%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 261 EGS+IR+ RRL+E + Q+ AA+ +G +L++K + R I+F+ SLYL Sbjct: 1065 EGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)| Length = 1287 Score = 45.8 bits (107), Expect = 4e-05 Identities = 21/53 (39%), Positives = 33/53 (62%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 261 EG+++R++ LDE ++K A+ +G L K A E ++R I+FA SLYL Sbjct: 1235 EGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
>SKIV2_HUMAN (Q15477) Helicase SKI2W (EC 3.6.1.-) (Helicase-like protein) (HLP)| Length = 1246 Score = 44.7 bits (104), Expect = 9e-05 Identities = 24/52 (46%), Positives = 31/52 (59%) Frame = -3 Query: 419 EGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLY 264 EG ++R ++RL E L+ AA VGE L K A+ LRR I+FA SLY Sbjct: 1193 EGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated| protein 10.10) (High sulfur keratin-associated protein 10.10) (Keratin-associated protein 18-10) (Keratin-associated protein 18.10) Length = 251 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -1 Query: 316 ERRARACAGASCLPTHCTCDQWSSRCCTIRGIC*QSKCFLKQVSRANVA 170 E C +SC PT CT CC +C +S C++ S A+ + Sbjct: 121 ESSPSCCQQSSCQPTCCTSSPCQQACCV--PVCSKSVCYVPVCSGASTS 167
>PCNA2_AERPE (Q9Y9V7) DNA polymerase sliding clamp B1 (Proliferating cell| nuclear antigen homolog B1) (PCNA B1) Length = 251 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -3 Query: 374 NQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL*SVELPLLYHTGYMLAEQM 204 ++ K A+ + ++N E F + + LR IM + L +E+P L YM+ E+M Sbjct: 10 SKFKYIAQTLAKINDEGVFEFSLDGLRAWIMSPDKTSLAILEMPSLSFEEYMVEEEM 66
>HNF1_SALSA (Q91474) Hepatocyte nuclear factor 1 (HNF-1) (SHNF1)| Length = 559 Score = 28.9 bits (63), Expect = 5.2 Identities = 21/96 (21%), Positives = 35/96 (36%) Frame = +2 Query: 107 HPMLWQTMATSPCHVKDKLQNSYICSANLFQKTFALLTYTPYGTTAGAPLITGTMSWQT* 286 H TMA PCH+ K S+ ++L + + + GT +T T Sbjct: 436 HSPFMATMAQLPCHMYSKSDMSHYPPSSLLSQAMVITDSSSLGTLTS---LTTVRQILTT 492 Query: 287 CPGASSRSPLQTSSQGXXXXXXXXXXXADLEIHPAS 394 P + P+Q S +L+++P S Sbjct: 493 DPEEQTDQPIQEDSLHLQSPSPVPVSSGNLQLYPPS 528
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/32 (37%), Positives = 12/32 (37%) Frame = -1 Query: 298 CAGASCLPTHCTCDQWSSRCCTIRGIC*QSKC 203 C C PT CTC CC C Q C Sbjct: 73 CPMKPCCPTKCTCCPKKCTCCPQPTCCVQPTC 104
>COBQ_ARCFU (O28931) Probable cobyric acid synthase| Length = 464 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 401 LVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRR 291 L++ F++QL EAVG+V+ K +G E L+R Sbjct: 77 LLKPKGNFVSQLVVMGEAVGDVDSRKYYGVKVEWLKR 113
>LAMB3_MOUSE (Q61087) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Kalinin| B1 chain) Length = 1168 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -1 Query: 349 PLGRLTLRRSLERRARACAGASCLPTHCT-CDQWSSRCC 236 P+G L + R+ RA + G + T+CT QW +CC Sbjct: 29 PVGDLFIGRTQLLRASSTCGLTKPETYCTQYGQWQMKCC 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,893,632 Number of Sequences: 219361 Number of extensions: 1041241 Number of successful extensions: 2776 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2771 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
