Clone Name | rbastl55a07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK121851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101M14, full insert sequence Length = 3448 Score = 161 bits (81), Expect = 2e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 257 atcacaggtacaatgagttggcaaacatgatgccccggcgcaagctctcgctcgccgctc 316 ||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| ||||||| Sbjct: 3192 atcacagatacaatgagttggcgaacatgataccccgacgtaagctgtcgctggccgctc 3133 Query: 317 caaacttcttctcaaggttaacctccccaacggcttcagcggcagcttttagctgattta 376 | ||||| ||||||||||||||||| ||||| |||| ||| |||||||| | |||||| | Sbjct: 3132 cgaacttgttctcaaggttaacctcaccaacagcttgagcagcagctttcaactgattca 3073 Query: 377 gaaattcatccagcctcctaactagccgtatgatgcttccttcaa 421 ||||||||||||| || ||| | ||||||||||| |||||||||| Sbjct: 3072 gaaattcatccagtcttctagccagccgtatgatacttccttcaa 3028
>dbj|AK122056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114L01, full insert sequence Length = 3438 Score = 161 bits (81), Expect = 2e-36 Identities = 144/165 (87%) Strand = Plus / Minus Query: 257 atcacaggtacaatgagttggcaaacatgatgccccggcgcaagctctcgctcgccgctc 316 ||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| ||||||| Sbjct: 3182 atcacagatacaatgagttggcgaacatgataccccgacgtaagctgtcgctggccgctc 3123 Query: 317 caaacttcttctcaaggttaacctccccaacggcttcagcggcagcttttagctgattta 376 | ||||| ||||||||||||||||| ||||| |||| ||| |||||||| | |||||| | Sbjct: 3122 cgaacttgttctcaaggttaacctcaccaacagcttgagcagcagctttcaactgattca 3063 Query: 377 gaaattcatccagcctcctaactagccgtatgatgcttccttcaa 421 ||||||||||||| || ||| | ||||||||||| |||||||||| Sbjct: 3062 gaaattcatccagtcttctagccagccgtatgatacttccttcaa 3018
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 113 bits (57), Expect = 5e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 257 atcacaggtacaatgagttggcaaacatgatgccccggcgcaagctctcgctcgccgctc 316 ||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| ||||||| Sbjct: 149866 atcacagatacaatgagttggcgaacatgataccccgacgtaagctgtcgctggccgctc 149925 Query: 317 caaacttcttctcaaggttaacctccccaacggcttcagcggcagcttt 365 | ||||| ||||||||||||||||| ||||| |||| ||| |||||||| Sbjct: 149926 cgaacttgttctcaaggttaacctcaccaacagcttgagcagcagcttt 149974 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 ctgatttagaaattcatccagcctcctaactagccgtatgatgcttccttcaa 421 |||||| |||||||||||||| || ||| | ||||||||||| |||||||||| Sbjct: 150601 ctgattcagaaattcatccagtcttctagccagccgtatgatacttccttcaa 150653
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 113 bits (57), Expect = 5e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 257 atcacaggtacaatgagttggcaaacatgatgccccggcgcaagctctcgctcgccgctc 316 ||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| ||||||| Sbjct: 3782194 atcacagatacaatgagttggcgaacatgataccccgacgtaagctgtcgctggccgctc 3782253 Query: 317 caaacttcttctcaaggttaacctccccaacggcttcagcggcagcttt 365 | ||||| ||||||||||||||||| ||||| |||| ||| |||||||| Sbjct: 3782254 cgaacttgttctcaaggttaacctcaccaacagcttgagcagcagcttt 3782302 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 ctgatttagaaattcatccagcctcctaactagccgtatgatgcttccttcaa 421 |||||| |||||||||||||| || ||| | ||||||||||| |||||||||| Sbjct: 3782929 ctgattcagaaattcatccagtcttctagccagccgtatgatacttccttcaa 3782981
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 113 bits (57), Expect = 5e-22 Identities = 96/109 (88%) Strand = Plus / Plus Query: 257 atcacaggtacaatgagttggcaaacatgatgccccggcgcaagctctcgctcgccgctc 316 ||||||| |||||||||||||| |||||||| ||||| || ||||| ||||| ||||||| Sbjct: 3790888 atcacagatacaatgagttggcgaacatgataccccgacgtaagctgtcgctggccgctc 3790947 Query: 317 caaacttcttctcaaggttaacctccccaacggcttcagcggcagcttt 365 | ||||| ||||||||||||||||| ||||| |||| ||| |||||||| Sbjct: 3790948 cgaacttgttctcaaggttaacctcaccaacagcttgagcagcagcttt 3790996 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 369 ctgatttagaaattcatccagcctcctaactagccgtatgatgcttccttcaa 421 |||||| |||||||||||||| || ||| | ||||||||||| |||||||||| Sbjct: 3791623 ctgattcagaaattcatccagtcttctagccagccgtatgatacttccttcaa 3791675
>gb|BT019066.1| Zea mays clone Contig620.F mRNA sequence Length = 843 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 319 aacttcttctcaaggttaacctccccaacggcttcagcggcagcttttagctgatttaga 378 |||||||||||||||||||||||||| ||||||||||| |||||| | | |||||| ||| Sbjct: 397 aacttcttctcaaggttaacctcccccacggcttcagcagcagctctcaactgattcaga 456 Query: 379 aattcatccagcctcctaactagccgtatgatgcttccttcaa 421 |||||||||||||| ||| | || | ||||| |||||||||| Sbjct: 457 aattcatccagccttctagcaagtcttatgacacttccttcaa 499
>gb|BT018877.1| Zea mays clone EL01T0203B08.d mRNA sequence Length = 1726 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 319 aacttcttctcaaggttaacctccccaacggcttcagcggcagcttttagctgatttaga 378 |||||||||||||||||||||||||| ||||||||||| |||||| | | |||||| ||| Sbjct: 1434 aacttcttctcaaggttaacctcccccacggcttcagcagcagctctcaactgattcaga 1375 Query: 379 aattcatccagcctcctaactagccgtatgatgcttccttcaa 421 |||||||||||||| ||| | || | ||||| |||||||||| Sbjct: 1374 aattcatccagccttctagcaagtcttatgacacttccttcaa 1332
>gb|AY109657.1| Zea mays CL30827_1 mRNA sequence Length = 1658 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 319 aacttcttctcaaggttaacctccccaacggcttcagcggcagcttttagctgatttaga 378 |||||||||||||||||||||||||| ||||||||||| |||||| | | |||||| ||| Sbjct: 384 aacttcttctcaaggttaacctcccctacggcttcagcagcagctctcaactgattcaga 443 Query: 379 aattcatccagcctcctaactagccgtatgatgcttccttcaa 421 |||||||||||||| ||| | || | ||||| |||||||||| Sbjct: 444 aattcatccagccttctagcaagtcttatgacacttccttcaa 486
>gb|AC154144.9| Mus musculus chromosome 1, clone RP24-289K8, complete sequence Length = 158556 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tctgctaacttgtttcaaaaa 202 ||||||||||||||||||||| Sbjct: 92025 tctgctaacttgtttcaaaaa 92005
>emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chromosome X, complete sequence Length = 199101 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 acaaattacaaaacagctaca 176 ||||||||||||||||||||| Sbjct: 89387 acaaattacaaaacagctaca 89407
>emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chromosome X, complete sequence Length = 232188 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tgtcaaagacaaattacaaaa 168 ||||||||||||||||||||| Sbjct: 116718 tgtcaaagacaaattacaaaa 116698
>gb|AC009357.8| Drosophila melanogaster clone BACR18I07, complete sequence Length = 179374 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ttacaaaaatgttgatgtat 39 |||||||||||||||||||| Sbjct: 135625 ttacaaaaatgttgatgtat 135606
>gb|AC008224.19| Drosophila melanogaster clone BACR29J02, complete sequence Length = 181633 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ttacaaaaatgttgatgtat 39 |||||||||||||||||||| Sbjct: 156023 ttacaaaaatgttgatgtat 156042
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaggttaacctccccaacgg 349 |||||||||||||||||||| Sbjct: 16285 aaggttaacctccccaacgg 16266
>ref|XM_538305.2| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase 1B isoform a, transcript variant 1 (LOC481184), mRNA Length = 2629 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctgtggcagacgatggctac 135 |||||||||||||||||||| Sbjct: 2195 ctgtggcagacgatggctac 2214
>ref|XM_850877.1| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase 1B isoform a, transcript variant 6 (LOC481184), mRNA Length = 2629 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctgtggcagacgatggctac 135 |||||||||||||||||||| Sbjct: 2195 ctgtggcagacgatggctac 2214
>ref|XM_850837.1| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase 1B isoform a, transcript variant 5 (LOC481184), mRNA Length = 2596 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctgtggcagacgatggctac 135 |||||||||||||||||||| Sbjct: 2162 ctgtggcagacgatggctac 2181
>ref|XM_850793.1| PREDICTED: Canis familiaris similar to carnitine palmitoyltransferase 1B isoform a, transcript variant 4 (LOC481184), mRNA Length = 2644 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctgtggcagacgatggctac 135 |||||||||||||||||||| Sbjct: 2210 ctgtggcagacgatggctac 2229
>emb|X91396.2|HTDNALZF1 Helobdella triserialis partial Lzf1 gene for leech zinc finger 1 protein Length = 2045 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cttgtttcaaaaaacatttg 209 |||||||||||||||||||| Sbjct: 741 cttgtttcaaaaaacatttg 760
>emb|AL607076.9| Human DNA sequence from clone RP11-321J5 on chromosome 10, complete sequence Length = 61344 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 catgtcatgtcaaagacaaa 160 |||||||||||||||||||| Sbjct: 39082 catgtcatgtcaaagacaaa 39101
>emb|AL162733.9| Human DNA sequence from clone RP11-397F23 on chromosome 9 Contains the 5'end of the protein tyrosine phosphatase (non-receptor type 3) gene, a novel pseudogene, apseudogene similar to mouse Ybox transcription factor and a CpG island, complete sequence Length = 189367 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 ggcagcttttagctgatttagaaa 380 |||||||||||||||||| ||||| Sbjct: 185240 ggcagcttttagctgattaagaaa 185263
>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains the gene for a novel protein (zgc:63880), the 3' end of the gene for a novel protein similar to vertebrate KCND2, the 5' end of the ing3 gene for inhibitor of growth family member 3 and a CpG island, complete sequence Length = 200582 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 acaaattacaaaacagctacattt 179 ||||||||||||||||| |||||| Sbjct: 18746 acaaattacaaaacagcaacattt 18723
>gb|AC090309.4| Homo sapiens chromosome 11, clone RP11-142C4, complete sequence Length = 161586 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tttgctctgctaacttgttt 196 |||||||||||||||||||| Sbjct: 77488 tttgctctgctaacttgttt 77469
>gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, complete sequence Length = 59463 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 atgttgatgtataacagattgctt 51 ||||||||||||||||| |||||| Sbjct: 50879 atgttgatgtataacagtttgctt 50902
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 aaacttcttctcaaggttaa 337 |||||||||||||||||||| Sbjct: 280491 aaacttcttctcaaggttaa 280472
>gb|AC097518.2| Homo sapiens BAC clone RP11-487E13 from 4, complete sequence Length = 189323 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tacatcctatgctgtggcag 124 |||||||||||||||||||| Sbjct: 140229 tacatcctatgctgtggcag 140210
>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete sequence Length = 162801 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 tgctctgctaacttgtttcaaaaa 202 ||||||||||||||||| |||||| Sbjct: 73346 tgctctgctaacttgttgcaaaaa 73323
>gb|S79242.1| Pgh1b=2-phospho-D-glycerate hydrolase [Mesembryanthemum crystallinum=common ice plant, mRNA Partial, 1683 nt] Length = 1683 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 acttcttctcaaggttaacc 339 |||||||||||||||||||| Sbjct: 1074 acttcttctcaaggttaacc 1093
>gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complete sequence Length = 186187 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaggttaacctccccaacgg 349 |||||||||||||||||||| Sbjct: 141356 aaggttaacctccccaacgg 141337
>gb|AC073167.12| Homo sapiens chromosome 15, clone RP11-317G6, complete sequence Length = 174654 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atgtcaaagacaaattacaaaaca 170 |||||||||| ||||||||||||| Sbjct: 29629 atgtcaaagataaattacaaaaca 29606
>gb|AE003601.4| Drosophila melanogaster chromosome 3R, section 7 of 118 of the complete sequence Length = 305165 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ttacaaaaatgttgatgtat 39 |||||||||||||||||||| Sbjct: 278426 ttacaaaaatgttgatgtat 278407
>dbj|AP001636.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-142C4, complete sequence Length = 161582 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tttgctctgctaacttgttt 196 |||||||||||||||||||| Sbjct: 77486 tttgctctgctaacttgttt 77467
>emb|AJ620356.1| Oncorhynchus mykiss partial mRNA for carnitine palmitoyltransferase I (cpt1 gene), isoform D Length = 2724 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctgtggcagacgatggctac 135 |||||||||||||||||||| Sbjct: 1082 ctgtggcagacgatggctac 1101
>gb|AC118274.9| Homo sapiens chromosome 15, clone RP11-265M18, complete sequence Length = 177432 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atgtcaaagacaaattacaaaaca 170 |||||||||| ||||||||||||| Sbjct: 175231 atgtcaaagataaattacaaaaca 175208
>gb|U09194.1|MCU09194 Mesembryanthemum crystallinum 2-phospho-D-glycerate hydrolase, enolase, mRNA, complete cds Length = 1628 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 acttcttctcaaggttaacc 339 |||||||||||||||||||| Sbjct: 1074 acttcttctcaaggttaacc 1093 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,132,172 Number of Sequences: 3902068 Number of extensions: 4132172 Number of successful extensions: 82333 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82213 Number of HSP's gapped (non-prelim): 120 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)