ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55a06 |
|---|---|
| Clone Library Name | barley_pub |
>GUAA_LEGPL (Q5WVX4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 54 CKIFKYSIGNELFQKLNMSGVVLGEG 131 C+I+ Y+I +E F+KLN GV+L G Sbjct: 33 CEIYPYNINHEQFKKLNPCGVILSGG 58
>GUAA_LEGPA (Q5X4I9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 54 CKIFKYSIGNELFQKLNMSGVVLGEG 131 C+I+ Y+I +E F+KLN GV+L G Sbjct: 33 CEIYPYNINHEQFKKLNPCGVILSGG 58
>GUAA_LEGPH (Q5ZUS0) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 54 CKIFKYSIGNELFQKLNMSGVVLGEG 131 C+I+ Y I +E F+KLN GV+L G Sbjct: 33 CEIYPYHINHEQFKKLNPCGVILSGG 58
>NU1M_GORGO (Q9T9Z0) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -3 Query: 347 LTEIDMGSGFLLA-STLAEFSEEVCYATWYYQCNYGELYQLMHIVVPAPYDRTFLVILSA 171 L +++G F+LA S+LA +S + ++ W NY + L + Y+ T +IL + Sbjct: 95 LVNLNLGLLFILATSSLAVYS--ILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLS 152 Query: 170 RTVMN 156 +MN Sbjct: 153 TLLMN 157
>UL52_HHV6Z (P52540) DNA helicase/primase complex protein| Length = 860 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 94 WNSSFPILYLNILHLNIFCTSNS 26 ++ FP+ + +LH NIFC NS Sbjct: 404 YHRPFPVFRVQLLHKNIFCFGNS 426
>UL52_HHV6U (P52467) DNA helicase/primase complex protein| Length = 860 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 94 WNSSFPILYLNILHLNIFCTSNS 26 ++ FP+ + +LH NIFC NS Sbjct: 404 YHRPFPVFRVQLLHKNIFCFGNS 426
>IL17_HUMAN (Q16552) Interleukin-17A precursor (IL-17A) (IL-17) (Cytotoxic| T-lymphocyte-associated antigen 8) (CTLA-8) Length = 155 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2 Query: 173 RKE*QERFDHKELEPQCASAGTVLHNYTGSTKWHSRLLH*IQQ---VLRREETHFPCLFL 343 R E ER+ E +C G + N G+ +H + IQQ VLRRE H P F Sbjct: 78 RNEDPERYPSVIWEAKCRHLGCI--NADGNVDYHMNSVP-IQQEILVLRREPPHCPNSFR 134 Query: 344 *EQIL 358 E+IL Sbjct: 135 LEKIL 139
>YIS2_SHISO (P16940) Insertion element IS600 hypothetical 31 kDa protein| (ISO-S3 31 kDa protein) Length = 272 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/47 (19%), Positives = 24/47 (51%) Frame = +3 Query: 36 VQNMFKCKIFKYSIGNELFQKLNMSGVVLGEGD*NAPLSRVHHCSSG 176 +++++ C+I +Y++G + ++L + + P +HH G Sbjct: 132 IKDVYTCEIVRYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRG 178
>YN91_SCHPO (Q9Y808) Hypothetical protein C146.01 in chromosome II| Length = 1063 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 277 QTSSLNSASVEARRNPLPMSISVRTNIASTSYYIYL 384 +TS+ SASV ++ P++ + N A T+Y YL Sbjct: 463 RTSNPTSASVTSQNGQQPINTKLSANAAKTNYQSYL 498
>DYH11_HUMAN (Q96DT5) Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy| chain 11) Length = 4523 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%) Frame = -1 Query: 364 WMQYLFLQK*TWEVGFFSPQHLLNSV-----KKSAMPLGTT 257 W Q L L W GFF+PQ L ++ +K+ PL T Sbjct: 4371 WTQDLTLPAVVWLSGFFNPQSFLTAIMQTMARKNEWPLDKT 4411
>AFRP_STRGR (Q9ZN78) A-factor receptor protein (A-factor-binding protein)| Length = 276 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/42 (26%), Positives = 18/42 (42%) Frame = +3 Query: 156 VHHCSSGKNDKKGSIIRSWNHNVHQLVQFSIITLVVPSGIAD 281 V SG+ D +G + W H + + +I + P G D Sbjct: 159 VSEADSGRADLRGQVAEMWRHILPSIAHPGVIAHIKPEGRVD 200
>ATPB_CYACA (Q9TM41) ATP synthase beta chain (EC 3.6.3.14)| Length = 490 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = +3 Query: 78 GNELFQKLNMSGVVLGEGD*NAPLSRVHHCSSGKNDKKGSIIR 206 GN+L+Q++ SGV+ E D N LS+V C N+ G+ +R Sbjct: 206 GNDLYQEMKESGVI-NEKDLN--LSKVALCYGQMNEPPGARMR 245
>YPD8_CAEEL (Q11187) Hypothetical protein C05D11.8| Length = 873 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Frame = +3 Query: 60 IFKYSIGNELFQK-LNMSGVVL---GEGD*NAPLSRVHHCSSGKNDKKGSIIRSWNHNVH 227 ++K S G EL Q LN + + E +A LS + + + D + RSW Sbjct: 431 VYKASRGGELSQTYLNCIPICMLEYREAASHALLSSYMYSTRIRMDARSEQCRSWKWKYD 490 Query: 228 QLVQFSIITLVVPSGIADFFTEFSKC*GEKKPTSHVYFCKNKY 356 +V S + A F FS+ + TS + N+Y Sbjct: 491 GVVAGSFVLPAESDDDATFNVSFSRMSSSRSSTSMTPYVSNRY 533
>TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat| protein 1) Length = 594 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -1 Query: 121 STTPDIFNFWNSSFPILYLNILHLNIFCTSN 29 S D+ W S FP Y +++ LNI C ++ Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196
>MATK_ASTSI (Q5D1C1) Maturase K (Intron maturase)| Length = 508 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -1 Query: 106 IFNFWNSSFPILYLNILHLNIFCTSNSWL 20 I +W P +L L L FC NSW+ Sbjct: 165 ILRYWVKDAPFFHLLRLFLYNFCNRNSWI 193
>YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 intergenic| region Length = 1658 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +2 Query: 122 RGRRLKCTTFQGSSLFER--KE*QERFDHKELEPQCASAGTVLHNYTGSTKWHSRLL 286 RG+ + T + +LFER +E ++RF + ++++ YTG++K H RL+ Sbjct: 98 RGKSILTTLEKEDALFERSLEEERQRFQLHD---------SLMNKYTGNSKSHQRLI 145
>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa| golgin) (Golgin-245) (Protein 72.1) Length = 2230 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 95 EIEYVRSSARGRRLKCTTFQGSSLFERKE*QERFDHKELEPQCASA 232 EI +RS R+K T QG L E+KE ER +ELE ++A Sbjct: 383 EIAQLRS-----RIKQMTTQGEELREQKEKSERAAFEELEKALSTA 423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,830,293 Number of Sequences: 219361 Number of extensions: 1133584 Number of successful extensions: 2687 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2687 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
