ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55a01 |
|---|---|
| Clone Library Name | barley_pub |
>ASK1_CANGA (Q6FIN2) DASH complex subunit ASK1 (Outer kinetochore protein ASK1)| (Associated with spindles and kinetochores protein 1) Length = 204 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +1 Query: 61 TKQQGNDGHNARKHTNNTVIHIRHLH---SMVLPRPDKNTPQQATVTHGSS*T*QEHPQQ 231 T++QG D R+ + I+ + S V+P PDK PQQ+ GSS ++ P Sbjct: 139 TREQGEDDSVQRQKKRKVSLLIQERYGSSSSVMPSPDKRVPQQSL---GSSPVKEQVPLP 195 Query: 232 AT 237 T Sbjct: 196 GT 197
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 125 ICITVLLVCFLALWPSLPCCLVYELAFAL 39 +C + LVCF+ LW +P V++ F L Sbjct: 2759 VCFVLSLVCFIGLWCLMPTYTVHKSDFQL 2787
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 125 ICITVLLVCFLALWPSLPCCLVYELAFAL 39 +C + LVCF+ LW +P V++ F L Sbjct: 2759 VCFVLSLVCFIGLWCLMPTYTVHKSDFQL 2787
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 125 ICITVLLVCFLALWPSLPCCLVYELAFAL 39 +C + LVCF+ LW +P V++ F L Sbjct: 2759 VCFLLSLVCFIGLWCLMPTYTVHKSDFQL 2787
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 125 ICITVLLVCFLALWPSLPCCLVYELAFAL 39 +C + LVCF+ LW +P V++ F L Sbjct: 2759 VCFLLSLVCFIGLWCLMPTYTVHKSDFQL 2787
>WDR57_MOUSE (Q6PE01) WD-repeat protein 57| Length = 358 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = +1 Query: 223 PQQATDTRLIYTWKWNLSWIELPLSLLAKHSGPPLVLLWHPFSFLSGSS*AS 378 PQQAT L+ S ++ P+ LL+ H G +HP +GS+ AS Sbjct: 37 PQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHP----NGSTLAS 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,423,810 Number of Sequences: 219361 Number of extensions: 1061302 Number of successful extensions: 2331 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2331 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
