>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA|
          Length = 396

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 72  RSHLEIDTYLMRERERESARLYFQEQNVGPPPGLGKIYRILGVTDVHARKPYSFA*DAIT 251
           R HLE     + ERER+  +L +   + G P  L +I R+ GVT    R+  S     + 
Sbjct: 325 RQHLEAVLSTLGERERKVVQLRYGLAD-GRPRTLEEIGRLFGVTRERIRQIESKTLSKLR 383

Query: 252 DHHY 263
           DH Y
Sbjct: 384 DHAY 387

>RPOD_STRAU (P27785) RNA polymerase sigma factor rpoD|
          Length = 317

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +3

Query: 78  HLEIDTYLMRERERESARLYFQEQNVGPPPGLGKIYRILGVTDVHARKPYSFA*DAITDH 257
           HLE     + ERER+  +L +   + G P  L +I RI GVT    R+  S   + + DH
Sbjct: 248 HLEAVLSTLGERERKVVQLRYGLAD-GRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDH 306

Query: 258 HY 263
            +
Sbjct: 307 AF 308

>ASTD_ECOLI (P76217) Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.-)|
          Length = 492

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 170 TRQNLPYTGSYRCTCTQALLLCLGCHYRSPLPTLPSVT---CPTPWDD 304
           T Q+   T   RCTC + LLL  G    + L  L +V+    P  WDD
Sbjct: 265 TIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDD 312

>NAHR_PSEPU (P10183) HTH-type transcriptional activator nahR|
          Length = 300

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 24/72 (33%), Positives = 29/72 (40%)
 Frame = +3

Query: 78  HLEIDTYLMRERERESARLYFQEQNVGPPPGLGKIYRILGVTDVHARKPYSFA*DAITDH 257
           H E+DTY+ R   R   RL          P    +  IL  TD+ A  P   A D   + 
Sbjct: 206 HGEVDTYMTRVGIRRDIRL--------EVPHFAAVGHILQRTDLLATVPIRLA-DCCVEP 256

Query: 258 HYLLCLPSPVQL 293
             L  LP PV L
Sbjct: 257 FGLSALPHPVVL 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,631,089
Number of Sequences: 219361
Number of extensions: 982565
Number of successful extensions: 3096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3096
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)