>gb|AC133920.2| Homo sapiens chromosome 16 clone RP11-413O9, complete sequence
          Length = 197357

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 237    taggatgccattacagatcaccatta 262
              |||| |||||||||||||||||||||
Sbjct: 102231 taggctgccattacagatcaccatta 102206

>gb|AC074115.4| Homo sapiens BAC clone RP11-291N9 from 7, complete sequence
          Length = 81289

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 44    caacaaaaaaggaagaacaaaatgg 68
             ||||||||||| |||||||||||||
Sbjct: 19556 caacaaaaaagaaagaacaaaatgg 19580

>gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, complete sequence
          Length = 192395

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 44     caacaaaaaaggaagaacaaaatgg 68
              ||||||||||| |||||||||||||
Sbjct: 179840 caacaaaaaagaaagaacaaaatgg 179816

>emb|AL356094.11| Human DNA sequence from clone RP11-64I5 on chromosome 6, complete
              sequence
          Length = 157588

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     aaaaaaggaagaacaaaatgg 68
              |||||||||||||||||||||
Sbjct: 156574 aaaaaaggaagaacaaaatgg 156554

>gb|AC118275.4| Homo sapiens BAC clone RP11-38M16 from 4, complete sequence
          Length = 75733

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    aacaaaaaaggaagaacaaaa 65
             |||||||||||||||||||||
Sbjct: 61701 aacaaaaaaggaagaacaaaa 61721

>ref|XM_413807.1| PREDICTED: Gallus gallus similar to Scg3 protein (LOC415424), mRNA
          Length = 2074

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 40   gattcaacaaaaaaggaagaacaaaatg 67
            ||||| |||||||| |||||||||||||
Sbjct: 1363 gattccacaaaaaatgaagaacaaaatg 1390

>gb|AC132278.3| Mus musculus BAC clone RP24-346C20 from chromosome 8, complete sequence
          Length = 154524

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    cattacagatcaccattacctact 268
              ||||||||| ||||||||||||||
Sbjct: 111696 cattacagaccaccattacctact 111719

>gb|AE006372.1| Lactococcus lactis subsp. lactis IL1403 section 134 of 218 of the
            complete genome
          Length = 10109

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   aaaaaaggaagaacaaaatg 67
            ||||||||||||||||||||
Sbjct: 8884 aaaaaaggaagaacaaaatg 8865

>gb|AC133210.3| Mus musculus chromosome UNK clone RP23-27L12, complete sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   acagatgtacatgcacgcaa 220
             ||||||||||||||||||||
Sbjct: 91106 acagatgtacatgcacgcaa 91087

>gb|AC122225.4| Mus musculus BAC clone RP23-131E21 from 9, complete sequence
          Length = 209737

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aggaagaacaaaatggtacc 72
              ||||||||||||||||||||
Sbjct: 204282 aggaagaacaaaatggtacc 204263

>gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosome 16, complete
             sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    aaaaaggaagaacaaaatgg 68
             ||||||||||||||||||||
Sbjct: 46147 aaaaaggaagaacaaaatgg 46166

>emb|CR954192.2| Medicago truncatula chromosome 5 clone mth2-15h3, COMPLETE SEQUENCE
          Length = 118151

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    tcaacaaaaaaggaagaacaaaat 66
             |||| |||||||||||||||||||
Sbjct: 23020 tcaagaaaaaaggaagaacaaaat 22997

>emb|AL139384.17| Human DNA sequence from clone RP11-88E10 on chromosome 13q33.1-34
             Contains the 5' end of the ATP11A gene for Class VI ATPase
             type IIA, a novel gene, the 5' end of the TUBGCP3 gene for
             tubulin gamma complex associated protein 3 and two CpG
             islands, complete sequence
          Length = 187157

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 35    ctgctgattcaacaaaaaaggaagaaca 62
             ||||||||||| |||||||| |||||||
Sbjct: 53950 ctgctgattcagcaaaaaagcaagaaca 53977

>gb|AC164293.2| Mus musculus BAC clone RP24-208N14 from chromosome 9, complete
           sequence
          Length = 166713

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  aggaagaacaaaatggtacc 72
           ||||||||||||||||||||
Sbjct: 163 aggaagaacaaaatggtacc 144

>gb|AF349457.1| Lactococcus lactis bacteriophage ul36, complete genome
          Length = 36798

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aaaaaaggaagaacaaaatg 67
            ||||||||||||||||||||
Sbjct: 8267 aaaaaaggaagaacaaaatg 8286

>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 44      caacaaaaaaggaagaacaa 63
               ||||||||||||||||||||
Sbjct: 1508483 caacaaaaaaggaagaacaa 1508464

>gb|AF323669.1|AF323669 Bacteriophage bIL286, complete genome
          Length = 41834

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aaaaaaggaagaacaaaatg 67
            ||||||||||||||||||||
Sbjct: 7016 aaaaaaggaagaacaaaatg 7035

>gb|AF212845.1|AF212845 Lactococcus lactis bacteriophage ul36 ORF111a (ORF111a), ORF78a
            (ORF78a), ORF61a (ORF61a), ORF131 (ORF131), ORF252
            (ORF252), putative single stranded binding protein
            (ORF141), putative replisome organizer (ORF255), ORF241
            (ORF241), ORF129 (ORF129), ORF129 (ORF79a), ORF68a
            (ORF68a), ORF56 (ORF56), ORF68b (ORF68b), ORF237
            (ORF237), putative dUTPase (ORF139a), ORF118a (ORF118a),
            ORF65 (ORF65), and ORF120a (ORF120a) genes, complete cds
          Length = 8320

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aaaaaaggaagaacaaaatg 67
            ||||||||||||||||||||
Sbjct: 2736 aaaaaaggaagaacaaaatg 2755

>emb|BX004780.4| Zebrafish DNA sequence from clone CH211-202P1 in linkage group 20,
              complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gatcaccattacctactctg 271
              ||||||||||||||||||||
Sbjct: 131981 gatcaccattacctactctg 132000

>dbj|AP001709.1| Homo sapiens genomic DNA, chromosome 21q, section 53/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aaaaggaagaacaaaatggt 69
             ||||||||||||||||||||
Sbjct: 17988 aaaaggaagaacaaaatggt 17969

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     acaaaaaaggaagaacaaaa 65
              ||||||||||||||||||||
Sbjct: 739858 acaaaaaaggaagaacaaaa 739839

>gb|AC141438.4| Mus musculus BAC clone RP23-212C9 from 9, complete sequence
          Length = 195679

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     aggaagaacaaaatggtacc 72
              ||||||||||||||||||||
Sbjct: 145096 aggaagaacaaaatggtacc 145115

>dbj|AP000243.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:B335C24, complete sequence
          Length = 96174

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aaaaggaagaacaaaatggt 69
             ||||||||||||||||||||
Sbjct: 31946 aaaaggaagaacaaaatggt 31927

>dbj|AP000203.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 1/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aaaaggaagaacaaaatggt 69
             ||||||||||||||||||||
Sbjct: 52976 aaaaggaagaacaaaatggt 52957


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,921,819
Number of Sequences: 3902068
Number of extensions: 2921819
Number of successful extensions: 59761
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59714
Number of HSP's gapped (non-prelim): 47
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)