ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54h01 |
|---|---|
| Clone Library Name | barley_pub |
>CEAM1_RAT (P16573) Carcinoembryonic antigen-related cell adhesion molecule 1| precursor (Cell-CAM 105) (C-CAM 105) (Ecto-ATPase) (ATP-dependenttaurocolate-carrier protein) (GP110) (pp120) Length = 519 Score = 30.0 bits (66), Expect = 1.5 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Frame = +3 Query: 12 TLNRIDQTYMYYYHCHSRNR*TQDTAGSWMVNTDTTNNATYIHK---YLHQGSDHQLSIQ 182 TL + +T YY C +RN T + + + ++ +A I YLHQGS+ LS Sbjct: 201 TLLNVRRTDKGYYECEARNPATFNRSDPFNLDVIYGPDAPVISPPDIYLHQGSNLNLSCH 260 Query: 183 ARDKSWPWIFLCQRANQPTSLHFLVVTTVT 272 A F TS L ++ +T Sbjct: 261 ADSNPPAQYFWLINEKLQTSSQELFISNIT 290
>YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor| Length = 1250 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = +3 Query: 75 TQDTA---GSWMVNTDTTNNATYIHKYLHQGSDHQL 173 TQD + G W+V +D TNNA+ +L QG++ L Sbjct: 54 TQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSL 89
>CP51_MYCVN (Q5IZM4) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)| (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) Length = 452 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 286 TNPLGVTVVTTRKCRDVGWFALWQRKI 206 T+P+G+ +C DVGWF L +++ Sbjct: 25 TDPIGLMKRVREECGDVGWFQLADKQV 51
>ITR2_YEAST (P30606) Myo-inositol transporter 2| Length = 612 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -1 Query: 137 YVGSVISSVCINHPGTSSVLCLSIPGVTVVVVHVCLI 27 +V ++I+ CI+ G +L + +PG+TV +V +C I Sbjct: 410 FVFTLIAFFCIDKIGRRYILLIGLPGMTVALV-ICAI 445
>ABC3G_PONPY (Q694C0) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)| Length = 384 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 313 PSPPPSDATT--NPLGVTVVTTRKCRDVGWFALWQRKIQGQDLSLAWMLNW 167 PS PP DA + + + R WF+ W++ + Q+ + W ++W Sbjct: 44 PSRPPLDAKIFRGQVYFELKNHPEMRFFHWFSKWRKLHRDQECEVTWYMSW 94
>ZCPW1_MOUSE (Q6IR42) Zinc finger CW-type PWWP domain protein 1 homolog| Length = 630 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 131 LHTQIFTSGIGSPIEHPSKGQVLALDLSLPKSKPAD 238 +++++ TS +G P+ PSK + L LS K K D Sbjct: 167 VNSEMGTSKLGQPVTEPSKKKFNRLSLSKQKKKAED 202
>DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC)| Length = 847 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +3 Query: 87 AGSWMVNTDTTNNATYIHKYLHQGSDHQLSIQARDKSWP----WIFLCQRANQPTSLH 248 AG+ T TTN+ + S+ Q SIQ ++ P + LC+ +N P+ H Sbjct: 574 AGNGATRTSTTNSYGHTTSAAQANSERQASIQEDNEESPEETELLSLCRTSNVPSPEH 631
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 27.7 bits (60), Expect = 7.6 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Frame = +1 Query: 43 TTTTVTPGIDRHKTLLVPGW---LIQTLLITLPTYTNIYIRDRITN*ASKQGTSLGPGSF 213 TTTT P R T PGW L ++ T T T T + T PG F Sbjct: 476 TTTTTAPTTTRTSTCKTPGWWGCLDESTTTTTTTSTT------TTTTTTTTSTCKTPGWF 529 Query: 214 SAKEQTS 234 K+ T+ Sbjct: 530 GCKDPTT 536
>RPC1_BPD3 (Q37906) Repressor protein CI| Length = 223 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = +3 Query: 60 SRNR*TQDTAGSWMVNTDTTNNATYIHKYLHQGSDHQLSIQAR 188 S R Q G+W++ +D + + Y + + S H+L I R Sbjct: 172 SIKRLNQQLTGAWLIRSDNPDKSAYPDEMASESSVHELPIIGR 214
>CAIC_PROSL (Q8GB18) Probable crotonobetaine/carnitine-CoA ligase (EC 6.2.1.-)| Length = 518 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 298 SDATTNPLGVTVVTTRKCRDVGWFALWQRKIQGQDLSLAWM 176 S T+ P GV V+T R G+++ WQ ++ D+ L M Sbjct: 183 SGTTSQPKGV-VITHYNLRIAGYYSSWQNALREDDIYLTVM 222
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 34 HTCTTTTVTPGIDRHKTLLVPGWLIQ 111 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 34 HTCTTTTVTPGIDRHKTLLVPGWLIQ 111 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 34 HTCTTTTVTPGIDRHKTLLVPGWLIQ 111 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>DUT_EBVA8 (Q07275) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (Fragment) Length = 275 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 167 PIEHPSKGQVLALDLSLPKSKPADVSTFPSSNYSNTQRV 283 PI HP + LD+SLPK D++ FP S T V Sbjct: 122 PINHPQYPGDVGLDVSLPK----DLALFPHQTVSVTLTV 156
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 34 HTCTTTTVTPGIDRHKTLLVPGWLIQ 111 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 34 HTCTTTTVTPGIDRHKTLLVPGWLIQ 111 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>NODC_RHILV (P04340) N-acetylglucosaminyltransferase (EC 2.4.1.-) (Nodulation| protein C) Length = 424 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 25 SIRHTCTTTTVTPGIDRHKTLLVPGWLIQTLLITLPTYTNI 147 + R T V PG+DR+ TL G + LL+ L T I Sbjct: 284 TFRDTLLALPVLPGLDRYLTLDAIGQNVGLLLLALSVLTGI 324
>DUT_EBV (P03195) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 278 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 167 PIEHPSKGQVLALDLSLPKSKPADVSTFPSSNYSNTQRV 283 PI HP + LD+SLPK D++ FP S T V Sbjct: 122 PINHPQYPGDVGLDVSLPK----DLALFPHQTVSVTLTV 156
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 34 HTCTTTTVTPGIDRHKTLLVPGWLIQ 111 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34 antigen) Length = 344 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = +3 Query: 129 TYIHKYLHQGSDHQLSIQARDKSWPWI-----FLCQRANQPTSLHFLVVTTVTPKG---- 281 T + L+QG +H S++ + S+ W F C+ N+ + + V KG Sbjct: 145 TDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCPEKGLPLY 204 Query: 282 LVVASEGGG 308 L+V GG Sbjct: 205 LIVGVSAGG 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,867,192 Number of Sequences: 219361 Number of extensions: 981681 Number of successful extensions: 2890 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2808 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2885 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
