Clone Name | rbastl54g11 |
---|---|
Clone Library Name | barley_pub |
>gb|AY110365.1| Zea mays CL38215_1 mRNA sequence Length = 607 Score = 58.0 bits (29), Expect = 8e-06 Identities = 35/37 (94%) Strand = Plus / Plus Query: 5 atatctgatggtattaacaaggaataaagttacaggc 41 |||| ||||||||||||||||| |||||||||||||| Sbjct: 15 atatttgatggtattaacaaggcataaagttacaggc 51
>dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E11, full insert sequence Length = 2911 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 10 tgatggtattaacaaggaataaagt 34 ||||||||||||||||||||||||| Sbjct: 2885 tgatggtattaacaaggaataaagt 2861
>gb|AC164119.4| Mus musculus BAC clone RP24-288I15 from chromosome 5, complete sequence Length = 189243 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 tcccaacattggcagggga 91 ||||||||||||||||||| Sbjct: 174688 tcccaacattggcagggga 174670
>gb|AC131728.4| Mus musculus BAC clone RP23-122G5 from chromosome 5, complete sequence Length = 211796 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 tcccaacattggcagggga 91 ||||||||||||||||||| Sbjct: 136825 tcccaacattggcagggga 136843
>emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 in linkage group 1, complete sequence Length = 179015 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 tacatcccaacattggcag 87 ||||||||||||||||||| Sbjct: 162113 tacatcccaacattggcag 162131
>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence Length = 199527 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 acaaggaataaagttacag 39 ||||||||||||||||||| Sbjct: 102781 acaaggaataaagttacag 102763
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 tattaacaaggaataaagttaca 38 |||||| |||||||||||||||| Sbjct: 20737059 tattaaaaaggaataaagttaca 20737081
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 tattaacaaggaataaagttaca 38 |||||| |||||||||||||||| Sbjct: 22572646 tattaagaaggaataaagttaca 22572624
>dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0035K09 Length = 124866 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 tattaacaaggaataaagttaca 38 |||||| |||||||||||||||| Sbjct: 56598 tattaagaaggaataaagttaca 56576
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047H05 Length = 187273 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 tattaacaaggaataaagttaca 38 |||||| |||||||||||||||| Sbjct: 38055 tattaagaaggaataaagttaca 38033
>emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 in linkage group 25, complete sequence Length = 197231 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ataaagttacaggcacaac 46 ||||||||||||||||||| Sbjct: 190827 ataaagttacaggcacaac 190845
>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173275 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctgatggtattaacaagga 27 ||||||||||||||||||| Sbjct: 137059 ctgatggtattaacaagga 137077
>emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0108J11, complete sequence Length = 124629 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 tattaacaaggaataaagttaca 38 |||||| |||||||||||||||| Sbjct: 83210 tattaaaaaggaataaagttaca 83232 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 825,885 Number of Sequences: 3902068 Number of extensions: 825885 Number of successful extensions: 51863 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51805 Number of HSP's gapped (non-prelim): 58 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)