ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY110365.1| Zea mays CL38215_1 mRNA sequence 58 8e-06
2dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
3gb|AC164119.4| Mus musculus BAC clone RP24-288I15 from chromosom... 38 7.6
4gb|AC131728.4| Mus musculus BAC clone RP23-122G5 from chromosome... 38 7.6
5emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 ... 38 7.6
6gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, co... 38 7.6
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
9dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
10dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
11emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 i... 38 7.6
12emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1... 38 7.6
13emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4,... 38 7.6

>gb|AY110365.1| Zea mays CL38215_1 mRNA sequence
          Length = 607

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 5  atatctgatggtattaacaaggaataaagttacaggc 41
          |||| ||||||||||||||||| ||||||||||||||
Sbjct: 15 atatttgatggtattaacaaggcataaagttacaggc 51



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>dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E11, full
            insert sequence
          Length = 2911

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 10   tgatggtattaacaaggaataaagt 34
            |||||||||||||||||||||||||
Sbjct: 2885 tgatggtattaacaaggaataaagt 2861



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>gb|AC164119.4| Mus musculus BAC clone RP24-288I15 from chromosome 5, complete sequence
          Length = 189243

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     tcccaacattggcagggga 91
              |||||||||||||||||||
Sbjct: 174688 tcccaacattggcagggga 174670



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>gb|AC131728.4| Mus musculus BAC clone RP23-122G5 from chromosome 5, complete sequence
          Length = 211796

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     tcccaacattggcagggga 91
              |||||||||||||||||||
Sbjct: 136825 tcccaacattggcagggga 136843



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>emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 in linkage group 1,
              complete sequence
          Length = 179015

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 69     tacatcccaacattggcag 87
              |||||||||||||||||||
Sbjct: 162113 tacatcccaacattggcag 162131



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>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence
          Length = 199527

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     acaaggaataaagttacag 39
              |||||||||||||||||||
Sbjct: 102781 acaaggaataaagttacag 102763



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 16       tattaacaaggaataaagttaca 38
                |||||| ||||||||||||||||
Sbjct: 20737059 tattaaaaaggaataaagttaca 20737081



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 16       tattaacaaggaataaagttaca 38
                |||||| ||||||||||||||||
Sbjct: 22572646 tattaagaaggaataaagttaca 22572624



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>dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0035K09
          Length = 124866

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 16    tattaacaaggaataaagttaca 38
             |||||| ||||||||||||||||
Sbjct: 56598 tattaagaaggaataaagttaca 56576



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>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1047H05
          Length = 187273

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 16    tattaacaaggaataaagttaca 38
             |||||| ||||||||||||||||
Sbjct: 38055 tattaagaaggaataaagttaca 38033



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>emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 in linkage group 25,
              complete sequence
          Length = 197231

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     ataaagttacaggcacaac 46
              |||||||||||||||||||
Sbjct: 190827 ataaagttacaggcacaac 190845



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>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173275

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      ctgatggtattaacaagga 27
              |||||||||||||||||||
Sbjct: 137059 ctgatggtattaacaagga 137077



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>emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0108J11,
             complete sequence
          Length = 124629

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 16    tattaacaaggaataaagttaca 38
             |||||| ||||||||||||||||
Sbjct: 83210 tattaaaaaggaataaagttaca 83232


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 825,885
Number of Sequences: 3902068
Number of extensions: 825885
Number of successful extensions: 51863
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51805
Number of HSP's gapped (non-prelim): 58
length of query: 158
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 136
effective length of database: 17,147,199,772
effective search space: 2332019168992
effective search space used: 2332019168992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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