ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FSHR_FELCA (Q5GJ04) Follicle-stimulating hormone receptor precur... 29 2.5
2PAFA_CAEEL (Q22943) Platelet-activating factor acetylhydrolase h... 28 4.3
3PCY1_YEAST (P13259) Choline-phosphate cytidylyltransferase (EC 2... 28 5.6
4HTPX2_SULAC (Q4JBJ9) Probable protease htpX homolog 2 (EC 3.4.24.-) 28 5.6

>FSHR_FELCA (Q5GJ04) Follicle-stimulating hormone receptor precursor (FSH-R)|
           (Follitropin receptor)
          Length = 695

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 319 LSLFHVMSLF*YMNYNLAPCGILLICCCDSHL-LPVSKPHLVAGCLESKI 173
           LS  +VMSL       L     ++ICCC +H+ L V  P++V+   ++KI
Sbjct: 526 LSQLYVMSLL-----VLNVLAFVVICCCYAHIYLTVRNPNIVSSSSDTKI 570



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>PAFA_CAEEL (Q22943) Platelet-activating factor acetylhydrolase homolog 2 (EC|
           3.1.1.47)
          Length = 388

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +1

Query: 172 QFLTPNTQQPNVVSTLAVGDYRSSR*AKSHMAQDCSSYTRIKTLHGKGRAHKGY 333
           ++L  ++Q+ NV+++  VG+ R      + M+  C  +  +   HG G +   Y
Sbjct: 71  EYLGQSSQKMNVITSTVVGEKREDCIENAQMSTKCDKWPIVVFSHGLGGSRTFY 124



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>PCY1_YEAST (P13259) Choline-phosphate cytidylyltransferase (EC 2.7.7.15)|
           (Phosphorylcholine transferase) (CTP:phosphocholine
           cytidylyltransferase) (CT) (CCT)
          Length = 424

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 27  KLRKYAPQGYKYMIQCGDDTIRMQLDALF 113
           +LRKY P+G+++ +   D  IR+  D +F
Sbjct: 84  ELRKYRPKGFRFNLPPTDRPIRIYADGVF 112



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>HTPX2_SULAC (Q4JBJ9) Probable protease htpX homolog 2 (EC 3.4.24.-)|
          Length = 320

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 37  NMRHRDTST*SSVEMIPSECNWMPYSV 117
           ++RHRDT    +V +IP+   W+ YS+
Sbjct: 139 HLRHRDTEILLAVSLIPTLMYWLGYSL 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,808,644
Number of Sequences: 219361
Number of extensions: 1115947
Number of successful extensions: 2154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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