ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 157 3e-35
2gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome... 157 3e-35
3gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome... 157 3e-35
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
5dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
6gb|AY110419.1| Zea mays CL19897_1 mRNA sequence 131 2e-27
7ref|XM_493810.1| Oryza sativa (japonica cultivar-group), predic... 100 6e-18
8gb|AC078923.12| Homo sapiens 12 BAC RP11-699I16 (Roswell Park Ca... 46 0.076
9gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, com... 42 1.2
10gb|AC147668.2| Pan troglodytes BAC clone CH251-120D9 from Y, com... 42 1.2
11gb|AC147164.2| Pan troglodytes BAC clone CH251-1H10 from Y, comp... 42 1.2
12gb|AC147139.2| Pan troglodytes BAC clone CH251-327B12 from Y, co... 42 1.2
13gb|AC144376.3| Pan troglodytes BAC clone RP43-53D10 from Y, comp... 42 1.2
14emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 42 1.2
15gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Can... 42 1.2
16gb|AC147115.4| Pan troglodytes BAC clone CH251-550P11 from chrom... 42 1.2
17gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.2
18gb|AC117521.2| Homo sapiens chromosome 5 clone RP11-1015H3, comp... 42 1.2
19gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, comp... 42 1.2
20ref|XM_938750.1| PREDICTED: Homo sapiens KIAA0825 protein (KIAA0... 42 1.2
21ref|XM_371761.3| PREDICTED: Homo sapiens similar to KIAA0825 pro... 42 1.2
22gb|AC160938.2| Pan troglodytes BAC clone CH251-901A9 from chromo... 42 1.2
23gb|AC010448.7| Homo sapiens chromosome 5 clone CTD-2237D2, compl... 42 1.2
24gb|AC147683.3| Pan troglodytes BAC clone CH251-430O9 from chromo... 42 1.2
25gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, com... 42 1.2
26gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q... 42 1.2
27dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 1.2
28gb|AC010283.5|AC010283 Homo sapiens chromosome 5 clone CTC-555J2... 42 1.2
29emb|AL928736.5| Zebrafish DNA sequence from clone CH211-202D20, ... 42 1.2
30gb|AC161006.2| Pan troglodytes BAC clone CH251-842O13 from chrom... 42 1.2
31gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chro... 42 1.2
32gb|AC110544.13| Mus musculus chromosome 3, clone RP23-112A11, co... 40 4.7
33ref|XM_632452.1| Dictyostelium discoideum hypothetical protein (... 40 4.7
34gb|BC100406.1| Mus musculus similar to Hypothetical protein DJ11... 40 4.7
35ref|NM_001034101.1| Mus musculus similar to Hypothetical protein... 40 4.7
36ref|XM_891538.2| PREDICTED: Mus musculus similar to PRAME family... 40 4.7
37ref|XM_285846.6| PREDICTED: Mus musculus similar to PRAME family... 40 4.7
38emb|CR392350.11| Zebrafish DNA sequence from clone DKEY-61N21 in... 40 4.7
39gb|AF545855.1| Rattus norvegicus cryptochrome 1 mRNA, complete cds 40 4.7
40emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on ch... 40 4.7
41gb|AC087865.8| Homo sapiens 12 BAC RP11-66D24 (Roswell Park Canc... 40 4.7
42emb|BX640523.14| Zebrafish DNA sequence from clone CH211-271E10 ... 40 4.7
43gb|AC010020.7| Drosophila melanogaster 3L BAC RP98-26I3 (Roswell... 40 4.7
44gb|AC091516.8| Homo sapiens 12q BAC RP11-474L23 (Roswell Park Ca... 40 4.7
45emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chr... 40 4.7
46emb|BX005061.9| Zebrafish DNA sequence from clone CH211-158F5 in... 40 4.7
47gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, comple... 40 4.7
48gb|AC073606.19| Homo sapiens 12 BAC RP11-390N6 (Roswell Park Can... 40 4.7
49gb|AE003554.3| Drosophila melanogaster chromosome 3L, section 31... 40 4.7
50gb|AC091272.12| Mus musculus chromosome 1, clone RP23-74B7, comp... 40 4.7
51emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 ... 40 4.7
52gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 4.7
53emb|AL626771.9| Mouse DNA sequence from clone RP23-281O10 on chr... 40 4.7
54emb|X02497.1|DMCHORSG D.melanogaster chorion genes s18-1, s15-1 ... 40 4.7
55emb|X06257.1|DMS18S15 Drosophila chorion genes s18-1 and s15-1 40 4.7
56emb|AL606926.6| Mouse DNA sequence from clone RP23-231M4 on chro... 40 4.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  157 bits (79), Expect = 3e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                           
Query: 189     ttcatatgagggtgagctgtagctttgggcggtgaggctgaggctcgaccacttccatat 248
               ||||||| |||||||| || | |||||||||||||||||||||||| ||||| |||||||
Sbjct: 1633178 ttcatatcagggtgagttgcaactttgggcggtgaggctgaggctcaaccacctccatat 1633237

                                                                           
Query: 249     ggatcataacactctgcagcacagcatagcttatgtttgttccaggcttggttactttct 308
               | ||||||||  ||||||| ||||| || || | |||||| || |||||||||||| |||
Sbjct: 1633238 gaatcataacggtctgcaggacagcgtaactgacgtttgtcccgggcttggttactctct 1633297

                                                          
Query: 309     ggtgcacctcgtctactacccagtcagcccctttgtctccctt 351
               |||||||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 1633298 ggtgcacctcatctactacccaatcaccccccttgtctccctt 1633340
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>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score =  157 bits (79), Expect = 3e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                         
Query: 189   ttcatatgagggtgagctgtagctttgggcggtgaggctgaggctcgaccacttccatat 248
             ||||||| |||||||| || | |||||||||||||||||||||||| ||||| |||||||
Sbjct: 40624 ttcatatcagggtgagttgcaactttgggcggtgaggctgaggctcaaccacctccatat 40683

                                                                         
Query: 249   ggatcataacactctgcagcacagcatagcttatgtttgttccaggcttggttactttct 308
             | ||||||||  ||||||| ||||| || || | |||||| || |||||||||||| |||
Sbjct: 40684 gaatcataacggtctgcaggacagcgtaactgacgtttgtcccgggcttggttactctct 40743

                                                        
Query: 309   ggtgcacctcgtctactacccagtcagcccctttgtctccctt 351
             |||||||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 40744 ggtgcacctcatctactacccaatcaccccccttgtctccctt 40786
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>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
              complete sequence
          Length = 127098

 Score =  157 bits (79), Expect = 3e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                          
Query: 189    ttcatatgagggtgagctgtagctttgggcggtgaggctgaggctcgaccacttccatat 248
              ||||||| |||||||| || | |||||||||||||||||||||||| ||||| |||||||
Sbjct: 112739 ttcatatcagggtgagttgcaactttgggcggtgaggctgaggctcaaccacctccatat 112798

                                                                          
Query: 249    ggatcataacactctgcagcacagcatagcttatgtttgttccaggcttggttactttct 308
              | ||||||||  ||||||| ||||| || || | |||||| || |||||||||||| |||
Sbjct: 112799 gaatcataacggtctgcaggacagcgtaactgacgtttgtcccgggcttggttactctct 112858

                                                         
Query: 309    ggtgcacctcgtctactacccagtcagcccctttgtctccctt 351
              |||||||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 112859 ggtgcacctcatctactacccaatcaccccccttgtctccctt 112901
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  157 bits (79), Expect = 3e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                           
Query: 189     ttcatatgagggtgagctgtagctttgggcggtgaggctgaggctcgaccacttccatat 248
               ||||||| |||||||| || | |||||||||||||||||||||||| ||||| |||||||
Sbjct: 1633176 ttcatatcagggtgagttgcaactttgggcggtgaggctgaggctcaaccacctccatat 1633235

                                                                           
Query: 249     ggatcataacactctgcagcacagcatagcttatgtttgttccaggcttggttactttct 308
               | ||||||||  ||||||| ||||| || || | |||||| || |||||||||||| |||
Sbjct: 1633236 gaatcataacggtctgcaggacagcgtaactgacgtttgtcccgggcttggttactctct 1633295

                                                          
Query: 309     ggtgcacctcgtctactacccagtcagcccctttgtctccctt 351
               |||||||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 1633296 ggtgcacctcatctactacccaatcaccccccttgtctccctt 1633338
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score =  157 bits (79), Expect = 3e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                         
Query: 189   ttcatatgagggtgagctgtagctttgggcggtgaggctgaggctcgaccacttccatat 248
             ||||||| |||||||| || | |||||||||||||||||||||||| ||||| |||||||
Sbjct: 45641 ttcatatcagggtgagttgcaactttgggcggtgaggctgaggctcaaccacctccatat 45700

                                                                         
Query: 249   ggatcataacactctgcagcacagcatagcttatgtttgttccaggcttggttactttct 308
             | ||||||||  ||||||| ||||| || || | |||||| || |||||||||||| |||
Sbjct: 45701 gaatcataacggtctgcaggacagcgtaactgacgtttgtcccgggcttggttactctct 45760

                                                        
Query: 309   ggtgcacctcgtctactacccagtcagcccctttgtctccctt 351
             |||||||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 45761 ggtgcacctcatctactacccaatcaccccccttgtctccctt 45803
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>gb|AY110419.1| Zea mays CL19897_1 mRNA sequence
          Length = 712

 Score =  131 bits (66), Expect = 2e-27
 Identities = 138/162 (85%)
 Strand = Plus / Plus

                                                                       
Query: 191 catatgagggtgagctgtagctttgggcggtgaggctgaggctcgaccacttccatatgg 250
           ||||| |||||||| || ||||||||||| ||||||||||| || || || |||||||| 
Sbjct: 271 catatcagggtgagttgcagctttgggcgatgaggctgaggttcaacaacctccatatga 330

                                                                       
Query: 251 atcataacactctgcagcacagcatagcttatgtttgttccaggcttggttactttctgg 310
           ||| | ||| |||| || | ||||||||| ||||||||||| |||||||||||| |||||
Sbjct: 331 atcctgacagtctggaggatagcatagctgatgtttgttccgggcttggttactctctgg 390

                                                     
Query: 311 tgcacctcgtctactacccagtcagcccctttgtctcccttc 352
           ||||||||||| || ||||| ||| | |||||||| ||||||
Sbjct: 391 tgcacctcgtcaacaacccaatcaccgcctttgtcgcccttc 432
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>ref|XM_493810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2727

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 242  tccatatggatcataacactctgcagcacagcatagcttatgtttgttccaggcttggtt 301
            |||||||| ||||||||  ||||||| ||||| || || | |||||| || |||||||||
Sbjct: 2642 tccatatgaatcataacggtctgcaggacagcgtaactgacgtttgtcccgggcttggtt 2583

                                                              
Query: 302  actttctggtgcacctcgtctactacccagtcagcccctttgtctccctt 351
            ||| ||||||||||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 2582 actctctggtgcacctcatctactacccaatcaccccccttgtctccctt 2533
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>gb|AC078923.12| Homo sapiens 12 BAC RP11-699I16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152805

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 98    atttgttgaattgaagaatggac 120
             |||||||||||||||||||||||
Sbjct: 25994 atttgttgaattgaagaatggac 25972
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>gb|AC147120.2| Pan troglodytes BAC clone CH251-531L7 from Y, complete sequence
          Length = 175034

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 33    gatttttacacagctctgtaaagag 57
             |||||| ||||||||||||||||||
Sbjct: 31817 gattttgacacagctctgtaaagag 31793
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>gb|AC147668.2| Pan troglodytes BAC clone CH251-120D9 from Y, complete sequence
          Length = 181148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 33     gatttttacacagctctgtaaagag 57
              |||||| ||||||||||||||||||
Sbjct: 164930 gattttgacacagctctgtaaagag 164906
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>gb|AC147164.2| Pan troglodytes BAC clone CH251-1H10 from Y, complete sequence
          Length = 188603

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 33    gatttttacacagctctgtaaagag 57
             |||||| ||||||||||||||||||
Sbjct: 33015 gattttgacacagctctgtaaagag 33039
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>gb|AC147139.2| Pan troglodytes BAC clone CH251-327B12 from Y, complete sequence
          Length = 165128

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 33     gatttttacacagctctgtaaagag 57
              |||||| ||||||||||||||||||
Sbjct: 127317 gattttgacacagctctgtaaagag 127293
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>gb|AC144376.3| Pan troglodytes BAC clone RP43-53D10 from Y, complete sequence
          Length = 212954

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 33     gatttttacacagctctgtaaagag 57
              |||||| ||||||||||||||||||
Sbjct: 197282 gattttgacacagctctgtaaagag 197258
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    agcacagcatagcttatgttt 286
              |||||||||||||||||||||
Sbjct: 449686 agcacagcatagcttatgttt 449666
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>gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170606

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   ttccaggcttggttactttct 308
             |||||||||||||||||||||
Sbjct: 36496 ttccaggcttggttactttct 36516
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>gb|AC147115.4| Pan troglodytes BAC clone CH251-550P11 from chromosome y, complete
             sequence
          Length = 200911

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 33    gatttttacacagctctgtaaagag 57
             |||||| ||||||||||||||||||
Sbjct: 15679 gattttgacacagctctgtaaagag 15703
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 33       gatttttacacagctctgtaaagag 57
                |||||| ||||||||||||||||||
Sbjct: 12550894 gattttgacacagctctgtaaagag 12550870



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 33       gatttttacacagctctgtaaagag 57
                |||||| ||||||||||||||||||
Sbjct: 11863891 gattttgacacagctctgtaaagag 11863915



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 33      gatttttacacagctctgtaaagag 57
               |||||| ||||||||||||||||||
Sbjct: 2357302 gattttgacacagctctgtaaagag 2357278



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 33      gatttttacacagctctgtaaagag 57
               |||||| ||||||||||||||||||
Sbjct: 1691987 gattttgacacagctctgtaaagag 1692011
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>gb|AC117521.2| Homo sapiens chromosome 5 clone RP11-1015H3, complete sequence
          Length = 171405

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    aaaatttgttgaattgaagaa 115
             |||||||||||||||||||||
Sbjct: 81595 aaaatttgttgaattgaagaa 81615
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>gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, complete sequence
          Length = 151712

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    aaatttgttgaattgaagaat 116
             |||||||||||||||||||||
Sbjct: 45611 aaatttgttgaattgaagaat 45631
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>ref|XM_938750.1| PREDICTED: Homo sapiens KIAA0825 protein (KIAA0825), mRNA
          Length = 1863

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  aaaatttgttgaattgaagaa 115
           |||||||||||||||||||||
Sbjct: 9   aaaatttgttgaattgaagaa 29
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>ref|XM_371761.3| PREDICTED: Homo sapiens similar to KIAA0825 protein (LOC642488),
           mRNA
          Length = 1863

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  aaaatttgttgaattgaagaa 115
           |||||||||||||||||||||
Sbjct: 9   aaaatttgttgaattgaagaa 29
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>gb|AC160938.2| Pan troglodytes BAC clone CH251-901A9 from chromosome y, complete
             sequence
          Length = 212330

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 33    gatttttacacagctctgtaaagag 57
             |||||| ||||||||||||||||||
Sbjct: 72321 gattttgacacagctctgtaaagag 72297
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>gb|AC010448.7| Homo sapiens chromosome 5 clone CTD-2237D2, complete sequence
          Length = 140090

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     aaaatttgttgaattgaagaa 115
              |||||||||||||||||||||
Sbjct: 110562 aaaatttgttgaattgaagaa 110542
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>gb|AC147683.3| Pan troglodytes BAC clone CH251-430O9 from chromosome y, complete
              sequence
          Length = 176384

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 33     gatttttacacagctctgtaaagag 57
              |||||| ||||||||||||||||||
Sbjct: 138547 gattttgacacagctctgtaaagag 138523
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>gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, complete sequence
          Length = 200622

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     aaatttgttgaattgaagaat 116
              |||||||||||||||||||||
Sbjct: 189054 aaatttgttgaattgaagaat 189034
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>gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q24.2, complete sequence
          Length = 170376

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     aaatttgttgaattgaagaat 116
              |||||||||||||||||||||
Sbjct: 127196 aaatttgttgaattgaagaat 127176
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 20      gcatcaataaagagatttttacaca 44
               |||||||| ||||||||||||||||
Sbjct: 3175824 gcatcaatcaagagatttttacaca 3175800
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>gb|AC010283.5|AC010283 Homo sapiens chromosome 5 clone CTC-555J2, complete sequence
          Length = 157896

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     aaaatttgttgaattgaagaa 115
              |||||||||||||||||||||
Sbjct: 131151 aaaatttgttgaattgaagaa 131131
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>emb|AL928736.5| Zebrafish DNA sequence from clone CH211-202D20, complete sequence
          Length = 186742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    atcataaaatcaccaaaattt 101
             |||||||||||||||||||||
Sbjct: 70944 atcataaaatcaccaaaattt 70964
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>gb|AC161006.2| Pan troglodytes BAC clone CH251-842O13 from chromosome y, complete
              sequence
          Length = 201209

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 33     gatttttacacagctctgtaaagag 57
              |||||| ||||||||||||||||||
Sbjct: 142539 gattttgacacagctctgtaaagag 142563
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>gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chromosome y, complete
            sequence
          Length = 196073

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 33   gatttttacacagctctgtaaagag 57
            |||||| ||||||||||||||||||
Sbjct: 8644 gattttgacacagctctgtaaagag 8620
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>gb|AC110544.13| Mus musculus chromosome 3, clone RP23-112A11, complete sequence
          Length = 201027

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    gaggaattccaggctgattt 74
             ||||||||||||||||||||
Sbjct: 81475 gaggaattccaggctgattt 81494
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>ref|XM_632452.1| Dictyostelium discoideum hypothetical protein (DDB0187019), partial
            mRNA
          Length = 2169

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   aatatcataaaatcaccaaa 97
            ||||||||||||||||||||
Sbjct: 2083 aatatcataaaatcaccaaa 2102
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>gb|BC100406.1| Mus musculus similar to Hypothetical protein DJ1198H6.2, mRNA (cDNA
            clone MGC:118154 IMAGE:30727972), complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  cagtcagcccctttgtctcc 348
            ||||||||||||||||||||
Sbjct: 1613 cagtcagcccctttgtctcc 1594
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>ref|NM_001034101.1| Mus musculus similar to Hypothetical protein DJ1198H6.2 (MGC118154),
            mRNA
          Length = 2090

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  cagtcagcccctttgtctcc 348
            ||||||||||||||||||||
Sbjct: 1613 cagtcagcccctttgtctcc 1594
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>ref|XM_891538.2| PREDICTED: Mus musculus similar to PRAME family member DJ1198H6.2
            (LOC626922), mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  cagtcagcccctttgtctcc 348
            ||||||||||||||||||||
Sbjct: 1610 cagtcagcccctttgtctcc 1591
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>ref|XM_285846.6| PREDICTED: Mus musculus similar to PRAME family member DJ1198H6.2
            (LOC329984), mRNA
          Length = 2052

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  cagtcagcccctttgtctcc 348
            ||||||||||||||||||||
Sbjct: 1588 cagtcagcccctttgtctcc 1569
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>emb|CR392350.11| Zebrafish DNA sequence from clone DKEY-61N21 in linkage group 5,
             complete sequence
          Length = 230648

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    atcaataaagagatttttacacag 45
             ||||||||||||||||||| ||||
Sbjct: 97831 atcaataaagagatttttaaacag 97854



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    atcaataaagagatttttacacag 45
             ||||||||||||||||||| ||||
Sbjct: 89438 atcaataaagagatttttaaacag 89461
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>gb|AF545855.1| Rattus norvegicus cryptochrome 1 mRNA, complete cds
          Length = 2495

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  cagcccctttgtctcccttc 352
            ||||||||||||||||||||
Sbjct: 2415 cagcccctttgtctcccttc 2434
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>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a
             ribosomal protein S6 (Rps6) pseudogene, a novel gene, the
             gene for a novel immunoglobulin domain containing protein
             and two CpG islands, complete sequence
          Length = 219893

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tttttagcatcaataaagag 33
             ||||||||||||||||||||
Sbjct: 41615 tttttagcatcaataaagag 41634
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>gb|AC087865.8| Homo sapiens 12 BAC RP11-66D24 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 169045

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 98   atttgttgaattgaagaatggaccctgg 125
            |||||||||||| ||||||| |||||||
Sbjct: 8108 atttgttgaattaaagaatgaaccctgg 8135
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>emb|BX640523.14| Zebrafish DNA sequence from clone CH211-271E10 in linkage group 5,
            complete sequence
          Length = 107704

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 22   atcaataaagagatttttacacag 45
            ||||||||||||||||||| ||||
Sbjct: 9805 atcaataaagagatttttaaacag 9828
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>gb|AC010020.7| Drosophila melanogaster 3L BAC RP98-26I3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 166857

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     ccaaaatttgttgaattgaa 112
              ||||||||||||||||||||
Sbjct: 104966 ccaaaatttgttgaattgaa 104985
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>gb|AC091516.8| Homo sapiens 12q BAC RP11-474L23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158998

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 98     atttgttgaattgaagaatggaccctgg 125
              |||||||||||| ||||||| |||||||
Sbjct: 133862 atttgttgaattaaagaatgaaccctgg 133835
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>emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chromosome 4, complete
             sequence
          Length = 202295

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   cagtcagcccctttgtctcc 348
             ||||||||||||||||||||
Sbjct: 29085 cagtcagcccctttgtctcc 29104



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   cagtcagcccctttgtctcc 348
             ||||||||||||||||||||
Sbjct: 13149 cagtcagcccctttgtctcc 13168
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>emb|BX005061.9| Zebrafish DNA sequence from clone CH211-158F5 in linkage group 5,
              complete sequence
          Length = 155854

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 159    taatgttacaattcatttgtacatttgt 186
              ||||||||||||| ||||||| ||||||
Sbjct: 129773 taatgttacaatttatttgtagatttgt 129746
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>gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, complete sequence
          Length = 104787

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aaaaagggtgaatgcactaa 161
             ||||||||||||||||||||
Sbjct: 58737 aaaaagggtgaatgcactaa 58756
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>gb|AC073606.19| Homo sapiens 12 BAC RP11-390N6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145430

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    catcaataaagagattttta 40
             ||||||||||||||||||||
Sbjct: 71775 catcaataaagagattttta 71794
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>gb|AE003554.3| Drosophila melanogaster chromosome 3L, section 31 of 83 of the complete
              sequence
          Length = 285158

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ccaaaatttgttgaattgaa 112
              ||||||||||||||||||||
Sbjct: 111085 ccaaaatttgttgaattgaa 111066
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>gb|AC091272.12| Mus musculus chromosome 1, clone RP23-74B7, complete sequence
          Length = 252476

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     tttacacagctctgtaaaga 56
              ||||||||||||||||||||
Sbjct: 170906 tttacacagctctgtaaaga 170925
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>emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 in linkage group 5,
              complete sequence
          Length = 168421

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     atcaataaagagatttttacacag 45
              ||||||||||||||||||| ||||
Sbjct: 154924 atcaataaagagatttttaaacag 154901



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     atcaataaagagatttttacacag 45
              ||||||||||||||||||| ||||
Sbjct: 139586 atcaataaagagatttttaaacag 139563
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      aaaatttgttgaattgaaga 114
               ||||||||||||||||||||
Sbjct: 1814260 aaaatttgttgaattgaaga 1814241
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>emb|AL626771.9| Mouse DNA sequence from clone RP23-281O10 on chromosome 4, complete
            sequence
          Length = 185594

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  cagtcagcccctttgtctcc 348
            ||||||||||||||||||||
Sbjct: 9088 cagtcagcccctttgtctcc 9069
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>emb|X02497.1|DMCHORSG D.melanogaster chorion genes s18-1, s15-1 and s19-1
          Length = 4797

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   ccaaaatttgttgaattgaa 112
            ||||||||||||||||||||
Sbjct: 1934 ccaaaatttgttgaattgaa 1915
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>emb|X06257.1|DMS18S15 Drosophila chorion genes s18-1 and s15-1
          Length = 3850

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   ccaaaatttgttgaattgaa 112
            ||||||||||||||||||||
Sbjct: 2793 ccaaaatttgttgaattgaa 2774
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>emb|AL606926.6| Mouse DNA sequence from clone RP23-231M4 on chromosome 4, complete
             sequence
          Length = 93508

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   cagtcagcccctttgtctcc 348
             ||||||||||||||||||||
Sbjct: 40640 cagtcagcccctttgtctcc 40621


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,605,163
Number of Sequences: 3902068
Number of extensions: 4605163
Number of successful extensions: 99456
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99242
Number of HSP's gapped (non-prelim): 214
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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