ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34) ... 28 4.5
2LAX5_MEDTR (Q8L883) Auxin transporter-like protein 5 (AUX1-like ... 28 5.9
3FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (F... 28 5.9

>LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34)|
           (5-lipoxygenase) (5-LO)
          Length = 672

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 101 KRLYNLPKGLPTYSETTAVSFSRH---EK*SQERNILTIKFVLPADGKSVAANRMAYVEH 271
           KR   LP+ LP  +E    S  RH   E+  QE NI  + + L  DG  + AN+     H
Sbjct: 245 KRCRELPQKLPVTTEMVECSLERHLSLEQEVQEGNIFIVDYEL-LDG--IDANKTDPCTH 301

Query: 272 GWLA 283
            +LA
Sbjct: 302 QFLA 305



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>LAX5_MEDTR (Q8L883) Auxin transporter-like protein 5 (AUX1-like protein 5)|
           (MtLAX5)
          Length = 490

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 21  SQTRVYTIFATKIVNDTNAYKPLPKTP 101
           S T VY  F   ++N +NA+  LPK+P
Sbjct: 279 SATAVYWAFGDMLLNHSNAFALLPKSP 305



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>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)|
          Length = 3103

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 9   ISTNSQTRVYTIFATKIVNDTN-AYKPLPKTPSACTIYQ 122
           +ST+ + +  T F  K + D   AYKP P+     TIYQ
Sbjct: 344 VSTDDRNQPITSFTQKDLRDLKIAYKPPPRDTDVQTIYQ 382


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,110,979
Number of Sequences: 219361
Number of extensions: 740808
Number of successful extensions: 1650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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