ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY110474.1| Zea mays CL17761_1 mRNA sequence 46 0.076
2emb|BX005339.7| Zebrafish DNA sequence from clone DKEY-71C4, com... 46 0.076
3gb|AC105167.8| Mus musculus, clone RP23-286L9, complete sequence 44 0.30
4gb|AC153976.3| Mus musculus 10 BAC RP24-309I5 (Roswell Park Canc... 44 0.30
5gb|AC018491.9| Drosophila melanogaster clone BACR11H15, complete... 42 1.2
6gb|AC154330.2| Mus musculus BAC clone RP23-286H23 from chromosom... 42 1.2
7gb|AC185537.1| Drosophila melanogaster clone BACR39I01, complete... 42 1.2
8ref|XM_501744.1| Yarrowia lipolytica CLIB122, YALI0C12012g predi... 42 1.2
9emb|AL118523.18|HSJ1031J8 Human DNA sequence from clone RP5-1031... 42 1.2
10emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in... 42 1.2
11emb|CR394532.14| Zebrafish DNA sequence from clone CH211-278L9 i... 42 1.2
12gb|AF230637.5| Homo sapiens chromosome 8 clone RP1-84O15 map 8p2... 42 1.2
13dbj|AP005827.1| Mus musculus genomic DNA, chromosome 16 clone:RP... 42 1.2
14gb|AC090993.5| Homo sapiens chromosome 8, clone RP1-84O15, compl... 42 1.2
15gb|AC095045.2| Homo sapiens BAC clone RP11-140M23 from 4, comple... 42 1.2
16gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, compl... 42 1.2
17emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in... 42 1.2
18emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain... 42 1.2
19gb|AE002611.5| Drosophila melanogaster chromosome X, section 66 ... 42 1.2
20emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 42 1.2
21emb|AL671991.5| Mouse DNA sequence from clone RP23-343L7 on chro... 42 1.2
22gb|AC114003.4| Mus musculus chromosome 18 clone RP23-174C24, com... 40 4.7
23gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 4.7
24gb|AC087325.9| Trypanosoma brucei chromosome 4 clone RPCI93-29M1... 40 4.7
25gb|AY737480.1| Danio rerio zona pellucida C related protein (zpc... 40 4.7
26gb|AY731568.1| Arachis hypogaea clone PM414 microsatellite sequence 40 4.7
27gb|AC138386.7| Mus musculus chromosome 1, clone RP24-433D10, com... 40 4.7
28gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complet... 40 4.7
29gb|AC119951.12| Mus musculus chromosome 9, clone RP24-448C4, com... 40 4.7
30gb|AC009353.9| Drosophila melanogaster clone BACR32F22, complete... 40 4.7
31gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, comp... 40 4.7
32ref|NM_153459.2| Mus musculus dual specificity phosphatase 7 (Du... 40 4.7
33gb|AC102734.11| Mus musculus chromosome 6, clone RP24-222N4, com... 40 4.7
34gb|AC125079.3| Mus musculus chromosome 16 clone RP23-480M17, com... 40 4.7
35emb|CT009734.9| Mouse DNA sequence from clone RP23-182E3 on chro... 40 4.7
36gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosom... 40 4.7
37gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 ma... 40 4.7
38gb|AC123061.4| Mus musculus BAC clone RP23-216H22 from 14, compl... 40 4.7
39gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, comple... 40 4.7
40gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complet... 40 4.7
41gb|AC101879.8| Mus musculus chromosome 7, clone RP23-378H21, com... 40 4.7
42gb|AC006945.17| Mus musculus strain 129/Sv clone ct7-453l13 map ... 40 4.7
43gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosom... 40 4.7
44gb|AC157764.4| Mus musculus chromosome 3, clone RP24-238B5, comp... 40 4.7
45emb|AL031008.1|HS360A4 Human DNA sequence from clone LA16c-360A4... 40 4.7
46emb|CR388171.5| Zebrafish DNA sequence from clone CH211-261O7, c... 40 4.7
47emb|AL645532.16| Mouse DNA sequence from clone RP23-295E4 on chr... 40 4.7
48emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chr... 40 4.7
49gb|AE006465.1| Homo sapiens 16p13.3 sequence section 4 of 8 40 4.7
50gb|DQ431145.1| Lates calcarifer clone Lca825 microsatellite sequ... 40 4.7
51gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer... 40 4.7
52gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence 40 4.7
53gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, comp... 40 4.7
54dbj|AK140372.1| Mus musculus adult male cortex cDNA, RIKEN full-... 40 4.7
55gb|AC012400.11| Homo sapiens chromosome 8, clone RP11-120I21, co... 40 4.7
56gb|DP000052.1| Sus scrofa target 126 genomic scaffold 40 4.7
57gb|AC155636.3| Mus musculus BAC clone RP23-345F5 from chromosome... 40 4.7
58dbj|AK037764.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.7
59dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
60gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, com... 40 4.7
61gb|AC087858.2| Homo sapiens chromosome 3 clone RP11-207E20 map 3... 40 4.7
62gb|AC153981.5| Mus musculus 10 BAC RP24-112H16 (Roswell Park Can... 40 4.7
63emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in ... 40 4.7
64gb|AC155244.2| Mus musculus BAC clone RP24-318B2 from 13, comple... 40 4.7
65emb|BX927094.13| Zebrafish DNA sequence from clone CH211-142P8 i... 40 4.7
66gb|AC120162.6| Mus musculus chromosome 8, clone RP24-456M18, com... 40 4.7
67gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 ... 40 4.7
68gb|AC111045.7| Mus musculus chromosome 3, clone RP23-457J17, com... 40 4.7
69dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.7
70gb|AC101950.11| Mus musculus chromosome 1, clone RP24-149K4, com... 40 4.7
71gb|AC174768.1| Gasterosteus aculeatus clone VMRC28-49C14, comple... 40 4.7
72gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosom... 40 4.7
73emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 i... 40 4.7
74gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complet... 40 4.7
75gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, comple... 40 4.7
76dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 4.7
77emb|AL627312.12| Mouse DNA sequence from clone RP23-276H1 on chr... 40 4.7
78emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chro... 40 4.7
79emb|AL669910.15| Mouse DNA sequence from clone RP23-119H5 on chr... 40 4.7
80emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chr... 40 4.7

>gb|AY110474.1| Zea mays CL17761_1 mRNA sequence
          Length = 1226

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 102  aacaagagacctataccaacatcaacaaatg 132
            ||||| ||||||||||||||| |||||||||
Sbjct: 1146 aacaaaagacctataccaacagcaacaaatg 1116



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>emb|BX005339.7| Zebrafish DNA sequence from clone DKEY-71C4, complete sequence
          Length = 172485

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 207   acatatttacaaatagacacgcacacacaca 237
             ||||||||||| |||||||| ||||||||||
Sbjct: 99673 acatatttacatatagacacacacacacaca 99643



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>gb|AC105167.8| Mus musculus, clone RP23-286L9, complete sequence
          Length = 215113

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 285   tttgctttgctgtatttaccaa 306
             ||||||||||||||||||||||
Sbjct: 12769 tttgctttgctgtatttaccaa 12790



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>gb|AC153976.3| Mus musculus 10 BAC RP24-309I5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 146772

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 285    tttgctttgctgtatttaccaa 306
              ||||||||||||||||||||||
Sbjct: 135023 tttgctttgctgtatttaccaa 135044



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>gb|AC018491.9| Drosophila melanogaster clone BACR11H15, complete sequence
          Length = 177953

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   aatagacacgcacacacacat 238
             |||||||||||||||||||||
Sbjct: 21046 aatagacacgcacacacacat 21066



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>gb|AC154330.2| Mus musculus BAC clone RP23-286H23 from chromosome 16, complete
             sequence
          Length = 203553

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 205   gtacatatttacaaatagacacgcacacacaca 237
             |||||||| |||| ||| |||||||||||||||
Sbjct: 44299 gtacatatctacacatacacacgcacacacaca 44267



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>gb|AC185537.1| Drosophila melanogaster clone BACR39I01, complete sequence
          Length = 161147

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    aatagacacgcacacacacat 238
              |||||||||||||||||||||
Sbjct: 122952 aatagacacgcacacacacat 122972



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>ref|XM_501744.1| Yarrowia lipolytica CLIB122, YALI0C12012g predicted mRNA
          Length = 1734

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 183  aacaaacaacattcttctgacagta 207
            ||||||| |||||||||||||||||
Sbjct: 1713 aacaaaccacattcttctgacagta 1689



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>emb|AL118523.18|HSJ1031J8 Human DNA sequence from clone RP5-1031J8 on chromosome 20 Contains a
              putative novel gene, STSs and GSSs, complete sequence
          Length = 155213

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    cagaacaaacaacattcttct 200
              |||||||||||||||||||||
Sbjct: 140711 cagaacaaacaacattcttct 140691



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>emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in linkage group 11,
             complete sequence
          Length = 145678

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   acaaatagacacgcacacaca 235
             |||||||||||||||||||||
Sbjct: 27916 acaaatagacacgcacacaca 27936



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>emb|CR394532.14| Zebrafish DNA sequence from clone CH211-278L9 in linkage group 19,
              complete sequence
          Length = 148777

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      aactagaatcatcacattaaa 21
              |||||||||||||||||||||
Sbjct: 125803 aactagaatcatcacattaaa 125823



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>gb|AF230637.5| Homo sapiens chromosome 8 clone RP1-84O15 map 8p21-p11, complete
             sequence
          Length = 90636

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 209   atatttacaaatagacacgcacacacaca 237
             ||||||||||||| |||| ||||||||||
Sbjct: 22962 atatttacaaatacacacacacacacaca 22934



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>dbj|AP005827.1| Mus musculus genomic DNA, chromosome 16 clone:RP21-668B6, complete
              sequence
          Length = 214865

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 205    gtacatatttacaaatagacacgcacacacaca 237
              |||||||| |||| ||| |||||||||||||||
Sbjct: 181394 gtacatatctacacatacacacgcacacacaca 181426



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>gb|AC090993.5| Homo sapiens chromosome 8, clone RP1-84O15, complete sequence
          Length = 90623

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 209   atatttacaaatagacacgcacacacaca 237
             ||||||||||||| |||| ||||||||||
Sbjct: 22949 atatttacaaatacacacacacacacaca 22921



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>gb|AC095045.2| Homo sapiens BAC clone RP11-140M23 from 4, complete sequence
          Length = 176923

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 209    atatttacaaatagacacgcacacacaca 237
              ||||||||||||| |||| ||||||||||
Sbjct: 106278 atatttacaaatacacacacacacacaca 106250



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>gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, complete sequence
          Length = 160174

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 221   agacacgcacacacacatctttttt 245
             |||||||||||| ||||||||||||
Sbjct: 19273 agacacgcacacgcacatctttttt 19297



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>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6,
             complete sequence
          Length = 214158

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    ctgagtcaatatgacataaca 105
             |||||||||||||||||||||
Sbjct: 56192 ctgagtcaatatgacataaca 56172



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>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364
          Length = 526707

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 328    cagctgattattattattcttgtca 352
              |||||| ||||||||||||||||||
Sbjct: 140573 cagctgtttattattattcttgtca 140549



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>gb|AE002611.5| Drosophila melanogaster chromosome X, section 66 of 74 of the complete
              sequence
          Length = 297848

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    aatagacacgcacacacacat 238
              |||||||||||||||||||||
Sbjct: 111908 aatagacacgcacacacacat 111928



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 183     aacaaacaacattcttctgacagta 207
               ||||||| |||||||||||||||||
Sbjct: 1654090 aacaaaccacattcttctgacagta 1654114



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>emb|AL671991.5| Mouse DNA sequence from clone RP23-343L7 on chromosome X, complete
             sequence
          Length = 211866

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   ctgattattattattcttgtc 351
             |||||||||||||||||||||
Sbjct: 44096 ctgattattattattcttgtc 44116



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>gb|AC114003.4| Mus musculus chromosome 18 clone RP23-174C24, complete sequence
          Length = 223724

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    acacgcacacacacatcttt 242
              ||||||||||||||||||||
Sbjct: 220186 acacgcacacacacatcttt 220167



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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    acaaatagacacgcacacacacat 238
              |||||||||||| |||||||||||
Sbjct: 483280 acaaatagacacacacacacacat 483303



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>gb|AC087325.9| Trypanosoma brucei chromosome 4 clone RPCI93-29M18, complete sequence
          Length = 123258

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   acaaatagacacgcacacacacat 238
             |||||||||||| |||||||||||
Sbjct: 35526 acaaatagacacacacacacacat 35549



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>gb|AY737480.1| Danio rerio zona pellucida C related protein (zpcx) mRNA, complete
           cds
          Length = 1748

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 cagcggccagctgattatta 340
           ||||||||||||||||||||
Sbjct: 762 cagcggccagctgattatta 781



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>gb|AY731568.1| Arachis hypogaea clone PM414 microsatellite sequence
          Length = 366

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 gacacgcacacacacatctt 241
           ||||||||||||||||||||
Sbjct: 119 gacacgcacacacacatctt 100



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>gb|AC138386.7| Mus musculus chromosome 1, clone RP24-433D10, complete sequence
          Length = 142114

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   cgcacacacacatctttttt 245
             ||||||||||||||||||||
Sbjct: 70948 cgcacacacacatctttttt 70967



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>gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complete sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   ctgattattattattcttgt 350
             ||||||||||||||||||||
Sbjct: 56225 ctgattattattattcttgt 56244



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>gb|AC119951.12| Mus musculus chromosome 9, clone RP24-448C4, complete sequence
          Length = 215131

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 192   cattcttctgacagtacatattta 215
             ||||| ||||||||||||||||||
Sbjct: 40093 cattcgtctgacagtacatattta 40070



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>gb|AC009353.9| Drosophila melanogaster clone BACR32F22, complete sequence
          Length = 157370

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   ctgattattattattcttgt 350
             ||||||||||||||||||||
Sbjct: 13921 ctgattattattattcttgt 13902



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>gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, complete sequence
          Length = 218429

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   atagacacgcacacacacat 238
             ||||||||||||||||||||
Sbjct: 15587 atagacacgcacacacacat 15568



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>ref|NM_153459.2| Mus musculus dual specificity phosphatase 7 (Dusp7), mRNA
          Length = 3211

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  atagacacgcacacacacat 238
            ||||||||||||||||||||
Sbjct: 3131 atagacacgcacacacacat 3150



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>gb|AC102734.11| Mus musculus chromosome 6, clone RP24-222N4, complete sequence
          Length = 238453

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   tacaaatagacacgcacacacaca 237
             ||||||||||||| ||||||||||
Sbjct: 37384 tacaaatagacacacacacacaca 37407



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>gb|AC125079.3| Mus musculus chromosome 16 clone RP23-480M17, complete sequence
          Length = 174536

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 210  tatttacaaatagacacgcacacacaca 237
            |||| |||||||||||| ||||||||||
Sbjct: 3026 tattaacaaatagacacacacacacaca 2999



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>emb|CT009734.9| Mouse DNA sequence from clone RP23-182E3 on chromosome 14, complete
             sequence
          Length = 202398

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    aatatgacataacaagagac 111
             ||||||||||||||||||||
Sbjct: 84895 aatatgacataacaagagac 84876



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>gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosome 10, complete sequence
          Length = 195384

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 223    acacgcacacacacatcttttttc 246
              |||| |||||||||||||||||||
Sbjct: 163131 acacacacacacacatcttttttc 163108



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>gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 map 6, complete sequence
          Length = 207091

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   acaaatagacacgcacacacacat 238
             ||||||||||||||| ||||||||
Sbjct: 60633 acaaatagacacgcatacacacat 60610



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>gb|AC123061.4| Mus musculus BAC clone RP23-216H22 from 14, complete sequence
          Length = 193093

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   cgcacacacacatctttttt 245
             ||||||||||||||||||||
Sbjct: 59264 cgcacacacacatctttttt 59245



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>gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, complete sequence
          Length = 210708

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atagacacgcacacacacat 238
              ||||||||||||||||||||
Sbjct: 139783 atagacacgcacacacacat 139802



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>gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complete sequence
          Length = 209523

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atagacacgcacacacacat 238
              ||||||||||||||||||||
Sbjct: 205525 atagacacgcacacacacat 205544



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>gb|AC101879.8| Mus musculus chromosome 7, clone RP23-378H21, complete sequence
          Length = 174481

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atagacacgcacacacacat 238
              ||||||||||||||||||||
Sbjct: 119252 atagacacgcacacacacat 119271



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>gb|AC006945.17| Mus musculus strain 129/Sv clone ct7-453l13 map 6, complete sequence
          Length = 120311

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    acaaatagacacgcacacacacat 238
              ||||||||||||||| ||||||||
Sbjct: 110938 acaaatagacacgcatacacacat 110915



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>gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosome 9, complete sequence
          Length = 204861

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   acacgcacacacacatcttttttc 246
             |||| |||||||||||||||||||
Sbjct: 97901 acacacacacacacatcttttttc 97878



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>gb|AC157764.4| Mus musculus chromosome 3, clone RP24-238B5, complete sequence
          Length = 146564

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 215    acaaatagacacgcacacacacat 238
              |||||||||||| |||||||||||
Sbjct: 144627 acaaatagacacacacacacacat 144650



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>emb|AL031008.1|HS360A4 Human DNA sequence from clone LA16c-360A4 on chromosome 16 Contains
            ESTs, complete sequence
          Length = 16043

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  tgctttgctttgctgtattt 301
            ||||||||||||||||||||
Sbjct: 3161 tgctttgctttgctgtattt 3180



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>emb|CR388171.5| Zebrafish DNA sequence from clone CH211-261O7, complete sequence
          Length = 145218

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    acacgcacacacacatcttttttc 246
              |||||||| |||||||||||||||
Sbjct: 128712 acacgcacgcacacatcttttttc 128735



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>emb|AL645532.16| Mouse DNA sequence from clone RP23-295E4 on chromosome 11 Contains two
             novel genes, the 3' end of the Egfr gene for epidermal
             growth factor receptor and the gene for a novel F-box
             domain containing protein, complete sequence
          Length = 161348

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    caatatgacataacaagaga 110
             ||||||||||||||||||||
Sbjct: 55969 caatatgacataacaagaga 55950



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>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes,
              complete sequence
          Length = 216199

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    acacgcacacacacatcttt 242
              ||||||||||||||||||||
Sbjct: 187478 acacgcacacacacatcttt 187497



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>gb|AE006465.1| Homo sapiens 16p13.3 sequence section 4 of 8
          Length = 278911

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   tgctttgctttgctgtattt 301
             ||||||||||||||||||||
Sbjct: 64744 tgctttgctttgctgtattt 64763



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>gb|DQ431145.1| Lates calcarifer clone Lca825 microsatellite sequence
          Length = 356

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 acacgcacacacacatcttt 242
           ||||||||||||||||||||
Sbjct: 278 acacgcacacacacatcttt 259



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>gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 118301

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 213   ttacaaatagacacgcacacacac 236
             |||||||||||||| |||||||||
Sbjct: 80966 ttacaaatagacacacacacacac 80943



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>gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence
          Length = 180097

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     acattaaaaacaatgggctg 33
              ||||||||||||||||||||
Sbjct: 145562 acattaaaaacaatgggctg 145581



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>gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, complete sequence
          Length = 215962

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tacatatttacaaatagaca 225
             ||||||||||||||||||||
Sbjct: 39298 tacatatttacaaatagaca 39279



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>dbj|AK140372.1| Mus musculus adult male cortex cDNA, RIKEN full-length enriched
            library, clone:B530003K07 product:dual specificity
            phosphatase 7, full insert sequence
          Length = 3211

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  atagacacgcacacacacat 238
            ||||||||||||||||||||
Sbjct: 3131 atagacacgcacacacacat 3150



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>gb|AC012400.11| Homo sapiens chromosome 8, clone RP11-120I21, complete sequence
          Length = 182378

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tacatatttacaaatagaca 225
             ||||||||||||||||||||
Sbjct: 21835 tacatatttacaaatagaca 21854



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>gb|DP000052.1| Sus scrofa target 126 genomic scaffold
          Length = 432382

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ctgattattattattcttgt 350
              ||||||||||||||||||||
Sbjct: 307129 ctgattattattattcttgt 307110



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>gb|AC155636.3| Mus musculus BAC clone RP23-345F5 from chromosome 17, complete sequence
          Length = 223528

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    atagacacgcacacacacat 238
              ||||||||||||||||||||
Sbjct: 142566 atagacacgcacacacacat 142547



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>dbj|AK037764.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130047P14 product:unclassifiable, full
            insert sequence
          Length = 3185

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  acacgcacacacacatcttt 242
            ||||||||||||||||||||
Sbjct: 2337 acacgcacacacacatcttt 2318



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 30       gctgttgcaatacttgcatt 49
                ||||||||||||||||||||
Sbjct: 20246311 gctgttgcaatacttgcatt 20246292



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>gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, complete sequence
          Length = 154316

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   acactacaggtaacatgtta 178
             ||||||||||||||||||||
Sbjct: 87856 acactacaggtaacatgtta 87837



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>gb|AC087858.2| Homo sapiens chromosome 3 clone RP11-207E20 map 3p, complete sequence
          Length = 179723

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 214   tacaaatagacacgcacacacaca 237
             |||||||| |||||||||||||||
Sbjct: 91578 tacaaatacacacgcacacacaca 91555



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>gb|AC153981.5| Mus musculus 10 BAC RP24-112H16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 177129

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   acacgcacacacacatcttttttc 246
             |||| |||||||||||||||||||
Sbjct: 10534 acacacacacacacatcttttttc 10511



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>emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in linkage group 6, complete
              sequence
          Length = 163223

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 214    tacaaatagacacgcacacacaca 237
              ||||||||||||| ||||||||||
Sbjct: 143436 tacaaatagacacacacacacaca 143413



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>gb|AC155244.2| Mus musculus BAC clone RP24-318B2 from 13, complete sequence
          Length = 198847

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    aatagacacgcacacacaca 237
              ||||||||||||||||||||
Sbjct: 117885 aatagacacgcacacacaca 117866



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>emb|BX927094.13| Zebrafish DNA sequence from clone CH211-142P8 in linkage group 22,
             complete sequence
          Length = 77143

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   acacgcacacacacatcttt 242
             ||||||||||||||||||||
Sbjct: 15323 acacgcacacacacatcttt 15342



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>gb|AC120162.6| Mus musculus chromosome 8, clone RP24-456M18, complete sequence
          Length = 190755

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 206   tacatatttacaaatagacacgcacacacaca 237
             |||||||||||| ||| |||| ||||||||||
Sbjct: 30653 tacatatttacatatatacacacacacacaca 30684



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>gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 of 73 of the complete
              sequence
          Length = 294609

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ctgattattattattcttgt 350
              ||||||||||||||||||||
Sbjct: 263875 ctgattattattattcttgt 263856



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>gb|AC111045.7| Mus musculus chromosome 3, clone RP23-457J17, complete sequence
          Length = 172660

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    acaaatagacacgcacacacacat 238
              |||||||||||| |||||||||||
Sbjct: 138523 acaaatagacacacacacacacat 138500



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>dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-334E6, complete
             sequences
          Length = 191362

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   tgctttgctttgctgtattt 301
             ||||||||||||||||||||
Sbjct: 96821 tgctttgctttgctgtattt 96802



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>gb|AC101950.11| Mus musculus chromosome 1, clone RP24-149K4, complete sequence
          Length = 161262

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tacatatttacaaatagaca 225
             ||||||||||||||||||||
Sbjct: 70867 tacatatttacaaatagaca 70886



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>gb|AC174768.1| Gasterosteus aculeatus clone VMRC28-49C14, complete sequence
          Length = 142399

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    aatagacacgcacacacaca 237
              ||||||||||||||||||||
Sbjct: 124043 aatagacacgcacacacaca 124024



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>gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosome 13, complete sequence
          Length = 181988

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    acactacaggtaacatgttaacag 182
              ||||| ||||||||||||||||||
Sbjct: 128883 acactgcaggtaacatgttaacag 128860



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>emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 in linkage group 5,
             complete sequence
          Length = 199019

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   tacaaatagacacgcacacacaca 237
             ||||||||||||| ||||||||||
Sbjct: 65446 tacaaatagacacacacacacaca 65469



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>gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complete sequence
          Length = 177637

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    acactacaggtaacatgtta 178
              ||||||||||||||||||||
Sbjct: 105226 acactacaggtaacatgtta 105245



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>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence
          Length = 217902

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   acacgcacacacacatcttt 242
             ||||||||||||||||||||
Sbjct: 99559 acacgcacacacacatcttt 99578



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>dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34J23, TM0284,
             complete sequence
          Length = 92675

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aaaactgagtcaatatgaca 100
             ||||||||||||||||||||
Sbjct: 15663 aaaactgagtcaatatgaca 15644



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>emb|AL627312.12| Mouse DNA sequence from clone RP23-276H1 on chromosome 11, complete
             sequence
          Length = 178178

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   acacgcacacacacatcttttttc 246
             |||| |||||||||||||||||||
Sbjct: 97345 acacacacacacacatcttttttc 97368



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>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete
             sequence
          Length = 174264

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   acacgcacacacacatcttt 242
             ||||||||||||||||||||
Sbjct: 61536 acacgcacacacacatcttt 61555



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>emb|AL669910.15| Mouse DNA sequence from clone RP23-119H5 on chromosome 2, complete
             sequence
          Length = 158275

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   acacgcacacacacatcttttttc 246
             |||| |||||||||||||||||||
Sbjct: 73052 acacacacacacacatcttttttc 73029



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>emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chromosome 4, complete
             sequence
          Length = 97114

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   acaaatagacacgcacacacacat 238
             ||||||| ||||||||||||||||
Sbjct: 20788 acaaatacacacgcacacacacat 20765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,352,488
Number of Sequences: 3902068
Number of extensions: 6352488
Number of successful extensions: 189135
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 188754
Number of HSP's gapped (non-prelim): 381
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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