ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 56 2e-08
2LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 49 4e-06
3LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 47 1e-05
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 47 1e-05
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 37 0.014
6LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 32 0.44
7LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 30 2.2
8LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 28 4.9
9MURE_NITEU (Q82VS8) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 28 6.4
10LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 28 8.4
11LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 28 8.4
12LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 28 8.4

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYPNTSDHKGAAAGLTAKGIPNSISI
Sbjct: 836 LLYPNTSDHKGAAAGLTAKGIPNSISI 862



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYPNTSD  GAAAG+TAKGIPNSISI
Sbjct: 840 LLYPNTSDVTGAAAGITAKGIPNSISI 866



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 20/27 (74%), Positives = 26/27 (96%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +++PNTSD+KGAA G+TA+GIPNSISI
Sbjct: 837 LMFPNTSDNKGAAEGITARGIPNSISI 863



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYPNTSD KG AAGL+A+GIPNSISI
Sbjct: 844 LLYPNTSDLKGDAAGLSARGIPNSISI 870



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 20/28 (71%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 227 VLYPNTSD-HKGAAAGLTAKGIPNSISI 147
           +LYPNTSD  K    GLTA GIPNSISI
Sbjct: 850 LLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           V  P T  H+ +  GLT KGIPNSISI
Sbjct: 838 VQLPYTLLHRSSEEGLTFKGIPNSISI 864



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           V  P T  H  +  GLT +GIPNSISI
Sbjct: 838 VQLPYTLLHPSSKEGLTFRGIPNSISI 864



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYP++ +      GLT +GIPNSISI
Sbjct: 846 LLYPSSEE------GLTCRGIPNSISI 866



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>MURE_NITEU (Q82VS8) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 521

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 210 LRPQGGRCRSYRQGHPQQHLHLI*AIGNHG 121
           LR + G+  S   GHP +HL L+   G +G
Sbjct: 90  LRHEAGKIASEAYGHPSRHLWLVGITGTNG 119



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYP++ +      GLT +GIPNSISI
Sbjct: 833 LLYPSSEE------GLTFRGIPNSISI 853



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYP++ +      GLT +GIPNSISI
Sbjct: 841 LLYPSSKE------GLTFRGIPNSISI 861



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 227 VLYPNTSDHKGAAAGLTAKGIPNSISI 147
           +LYP++ +      GLT +GIPNSISI
Sbjct: 819 LLYPSSEE------GLTFRGIPNSISI 839


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,149,286
Number of Sequences: 219361
Number of extensions: 503445
Number of successful extensions: 1187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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