Clone Name | rbastl54f12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 430 bits (217), Expect = e-118 Identities = 223/225 (99%) Strand = Plus / Minus Query: 2 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 1169 Query: 62 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 1109 Query: 122 ccatggttgccgatggcttaaattagatggagatgctgttggggatgcccttggcggtaa 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1108 ccatggttgccgatggcttaaattagatggagatgctgttggggatgcccttggcggtaa 1049 Query: 182 gaccggcagcggcccccttgtggtcggaggtgttggggtagagca 226 | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1048 gcccggcagcggcgcccttgtggtcggaggtgttggggtagagca 1004
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 422 bits (213), Expect = e-115 Identities = 222/225 (98%) Strand = Plus / Minus Query: 2 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2799 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 2740 Query: 62 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2739 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 2680 Query: 122 ccatggttgccgatggcttaaattagatggagatgctgttggggatgcccttggcggtaa 181 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 2679 ccatggttgccgatggcttagattagatggagatgctgttggggatgcccttggcggtaa 2620 Query: 182 gaccggcagcggcccccttgtggtcggaggtgttggggtagagca 226 | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2619 gcccggcagcggcgcccttgtggtcggaggtgttggggtagagca 2575
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 113 bits (57), Expect = 2e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| | Sbjct: 751 agatggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtgat 692 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 691 cggaggtgttggggtagagca 671
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 97.6 bits (49), Expect = 1e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||||| || ||||||||| | |||||| ||| Sbjct: 2611 agatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggt 2552 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 2551 cggaggtgtttgggtagagca 2531
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 1e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||||| || ||||||||| | |||||| ||| Sbjct: 30026447 agatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggt 30026388 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 30026387 cggaggtgtttgggtagagca 30026367 Score = 73.8 bits (37), Expect = 2e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||| ||||||||||||||||||||||||||||| | ||||| ||||| || || || Sbjct: 27803105 agatcgagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgt 27803046 Query: 206 cggaggtgttggggtagagca 226 |||||||||||||||| |||| Sbjct: 27803045 cggaggtgttggggtaaagca 27803025 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 27821684 agatggagatgctgttggggatgcccatggcggt 27821651 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 148 atggagatgctgttggggatgccctt 173 |||| ||||||||||||||||||||| Sbjct: 14300022 atggtgatgctgttggggatgccctt 14300047
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 97.6 bits (49), Expect = 1e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||||| || ||||||||| | |||||| ||| Sbjct: 2693 agatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggt 2634 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 2633 cggaggtgtttgggtagagca 2613
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 97.6 bits (49), Expect = 1e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||||| || ||||||||| | |||||| ||| Sbjct: 81304 agatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggt 81363 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 81364 cggaggtgtttgggtagagca 81384
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 1e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||||| || ||||||||| | |||||| ||| Sbjct: 30117869 agatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggt 30117810 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 30117809 cggaggtgtttgggtagagca 30117789 Score = 73.8 bits (37), Expect = 2e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||| ||||||||||||||||||||||||||||| | ||||| ||||| || || || Sbjct: 27894429 agatcgagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgt 27894370 Query: 206 cggaggtgttggggtagagca 226 |||||||||||||||| |||| Sbjct: 27894369 cggaggtgttggggtaaagca 27894349 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 27913008 agatggagatgctgttggggatgcccatggcggt 27912975 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 148 atggagatgctgttggggatgccctt 173 |||| ||||||||||||||||||||| Sbjct: 14294997 atggtgatgctgttggggatgccctt 14295022
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 97.6 bits (49), Expect = 1e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||||| || ||||||||| | |||||| ||| Sbjct: 2726 agatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggt 2667 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 2666 cggaggtgtttgggtagagca 2646
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 89.7 bits (45), Expect = 4e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 154 atgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggtcggaggtg 213 |||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 1 atgctgttggggatgcccttggcggtgaggccggcggcggcacccttgtggtcttaggtg 60 Query: 214 ttggggtagagca 226 || |||||||||| Sbjct: 61 ttagggtagagca 73
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 89.7 bits (45), Expect = 4e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 ||||||||||||||||||||||||||||||| || || || || ||||| || |||||| Sbjct: 2062 agatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggt 2003 Query: 206 cggaggtgttggggtagagca 226 | ||||||||||||||||||| Sbjct: 2002 cagaggtgttggggtagagca 1982
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 81.8 bits (41), Expect = 9e-13 Identities = 71/81 (87%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 ||||||||||||||||||||||||||||||| || || || || ||||| || |||||| Sbjct: 4660 agatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggt 4601 Query: 206 cggaggtgttggggtagagca 226 | ||||||||||| ||||||| Sbjct: 4600 cagaggtgttgggatagagca 4580
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 81.8 bits (41), Expect = 9e-13 Identities = 71/81 (87%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 ||||||||||||||||||||||||||||||| || || || || ||||| || |||||| Sbjct: 2593 agatggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggt 2534 Query: 206 cggaggtgttggggtagagca 226 | ||||||||||| ||||||| Sbjct: 2533 cagaggtgttgggatagagca 2513
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 73.8 bits (37), Expect = 2e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||| ||||||||||||||||||||||||||||| | ||||| ||||| || || || Sbjct: 2599 agatcgagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgt 2540 Query: 206 cggaggtgttggggtagagca 226 |||||||||||||||| |||| Sbjct: 2539 cggaggtgttggggtaaagca 2519
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 73.8 bits (37), Expect = 2e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||| ||||||||||||||||||||||||||||| | ||||| ||||| || || || Sbjct: 47235 agatcgagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgt 47176 Query: 206 cggaggtgttggggtagagca 226 |||||||||||||||| |||| Sbjct: 47175 cggaggtgttggggtaaagca 47155 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 65814 agatggagatgctgttggggatgcccatggcggt 65781
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 73.8 bits (37), Expect = 2e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||| ||||||||||||||||||||||||||||| | ||||| ||||| || || || Sbjct: 10788 agatcgagatgctgttggggatgcccttggcggtgatgccggcggcggcgccggtgacgt 10847 Query: 206 cggaggtgttggggtagagca 226 |||||||||||||||| |||| Sbjct: 10848 cggaggtgttggggtaaagca 10868
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 69.9 bits (35), Expect = 3e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggtcg 207 |||||||||||||| || |||||||||||||| | ||||| ||| | ||||| |||| Sbjct: 2618 atggagatgctgtttggaatgcccttggcggtgatgccggcggcgtcgcccttcgtgtcg 2559 Query: 208 gaggtgttggggtagagca 226 ||||||||||||||||||| Sbjct: 2558 gaggtgttggggtagagca 2540
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||||||||||||| |||| || || || | || ||| |||||| Sbjct: 904 agatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggt 845 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 844 cggaggtgttggggtagagca 824
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 794 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 735 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 734 cggaggtgttggggtagagca 714
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 65.9 bits (33), Expect = 5e-08 Identities = 69/81 (85%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 |||||||||||||||| || |||||||||||||| | ||||| || | || || | || Sbjct: 789 agatggagatgctgtttggaatgcccttggcggtgatgccggcggcatcgccattcttgt 730 Query: 206 cggaggtgttggggtagagca 226 ||||||||||||||||||||| Sbjct: 729 cggaggtgttggggtagagca 709
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 61.9 bits (31), Expect = 8e-07 Identities = 31/31 (100%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggc 176 ||||||||||||||||||||||||||||||| Sbjct: 1554 agatggagatgctgttggggatgcccttggc 1524
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 2444 agatggagatgctgttggggatgcccatggcggt 2411
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 2923 agatggagatgctgttggggatgcccatggcggt 2890
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 2917 agatggagatgctgttggggatgcccatggcggt 2884
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 1330 agatggagatgctgttggggatgcccatggcggt 1297
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 2595 agatggagatgctgttggggatgcccatggcggt 2562
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 2925 agatggagatgctgttggggatgcccatggcggt 2892
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 |||||||||||||||||||||||||| ||||||| Sbjct: 1495 agatggagatgctgttggggatgcccatggcggt 1462
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggt 179 ||||||||| |||||||||||||||| ||||||| Sbjct: 2762 agatggagacgctgttggggatgcccatggcggt 2729
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 50.1 bits (25), Expect = 0.003 Identities = 67/81 (82%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgcccttggcggtaagaccggcagcggcccccttgtggt 205 ||||||| |||||||| ||||||||| ||||||| || || | || ||| |||||| Sbjct: 2656 agatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggt 2597 Query: 206 cggaggtgttggggtagagca 226 |||||||||| |||||||||| Sbjct: 2596 cggaggtgtttgggtagagca 2576
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.012 Identities = 24/24 (100%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgccc 171 |||||||||||||||||||||||| Sbjct: 22970456 atggagatgctgttggggatgccc 22970433
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.012 Identities = 24/24 (100%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgccc 171 |||||||||||||||||||||||| Sbjct: 22898647 atggagatgctgttggggatgccc 22898624
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 48.1 bits (24), Expect = 0.012 Identities = 24/24 (100%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgccc 171 |||||||||||||||||||||||| Sbjct: 79733 atggagatgctgttggggatgccc 79710
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 48.1 bits (24), Expect = 0.012 Identities = 24/24 (100%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgccc 171 |||||||||||||||||||||||| Sbjct: 2912 atggagatgctgttggggatgccc 2889
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgcc 170 ||||||||||||||||||||||| Sbjct: 2770 atggagatgctgttggggatgcc 2748
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 46.1 bits (23), Expect = 0.047 Identities = 32/35 (91%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgcccttggcggtaag 182 ||||||||||||||||| |||||| |||| ||||| Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaag 2862
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||||| ||||||||| Sbjct: 2879 agatggagatgctgtttgggatgccc 2854
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 148 atggagatgctgttggggatgccctt 173 |||| ||||||||||||||||||||| Sbjct: 49251 atggtgatgctgttggggatgccctt 49276
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 148 atggagatgctgttggggatgccctt 173 |||| ||||||||||||||||||||| Sbjct: 111410 atggtgatgctgttggggatgccctt 111435
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||||| ||||||||| Sbjct: 5276965 agatggagatgctgtttgggatgccc 5276990
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||||| ||||||||| Sbjct: 3268 agatggagatgctgtttgggatgccc 3293
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||||| ||||||||| Sbjct: 2878 agatggagatgctgtttgggatgccc 2853
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||||| ||||||||| Sbjct: 2040 agatggagatgctgtttgggatgccc 2015
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence Length = 1304 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||| ||||||||||| Sbjct: 136 agatggagatgctgctggggatgccc 161
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence Length = 1439 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 agatggagatgctgttggggatgccc 171 |||||||||||||| ||||||||||| Sbjct: 1212 agatggagatgctgctggggatgccc 1187
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 42.1 bits (21), Expect = 0.74 Identities = 27/29 (93%) Strand = Plus / Minus Query: 148 atggagatgctgttggggatgcccttggc 176 ||||||||||||||||| |||||| |||| Sbjct: 363 atggagatgctgttgggaatgcccatggc 335
>ref|XM_797032.1| PREDICTED: Strongylocentrotus purpuratus similar to mothers against decapentaplegic homolog 8 protein, sma8 protein, transcript variant 19 (LOC582943), mRNA Length = 4080 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aaattagatggagatgctgt 160 |||||||||||||||||||| Sbjct: 3101 aaattagatggagatgctgt 3120
>ref|XM_797030.1| PREDICTED: Strongylocentrotus purpuratus similar to mothers against decapentaplegic homolog 8 protein, sma8 protein, transcript variant 18 (LOC582943), mRNA Length = 4176 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aaattagatggagatgctgt 160 |||||||||||||||||||| Sbjct: 3197 aaattagatggagatgctgt 3216
>ref|XM_797025.1| PREDICTED: Strongylocentrotus purpuratus similar to mothers against decapentaplegic homolog 8 protein, sma8 protein, transcript variant 17 (LOC582943), mRNA Length = 4125 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aaattagatggagatgctgt 160 |||||||||||||||||||| Sbjct: 3146 aaattagatggagatgctgt 3165
>ref|XM_797021.1| PREDICTED: Strongylocentrotus purpuratus similar to mothers against decapentaplegic homolog 8 protein, sma8 protein, transcript variant 16 (LOC582943), mRNA Length = 4188 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aaattagatggagatgctgt 160 |||||||||||||||||||| Sbjct: 3209 aaattagatggagatgctgt 3228
>ref|XM_796653.1| PREDICTED: Strongylocentrotus purpuratus similar to mothers against decapentaplegic homolog 8 protein, sma8 protein, transcript variant 2 (LOC582943), mRNA Length = 4200 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aaattagatggagatgctgt 160 |||||||||||||||||||| Sbjct: 3221 aaattagatggagatgctgt 3240
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gctgttggggatgcccttggcggt 179 ||||||||||||||||||| |||| Sbjct: 137475 gctgttggggatgcccttgccggt 137452
>emb|AL078613.10|HSA354I12 Human DNA sequence from clone RP11-354I12 on chromosome 22 Contains an STS and GSSs, complete sequence Length = 60837 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cacagacacacactacacca 78 |||||||||||||||||||| Sbjct: 58806 cacagacacacactacacca 58825
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gctgttggggatgcccttggcggt 179 ||||||||||||||||||| |||| Sbjct: 20830414 gctgttggggatgcccttgccggt 20830391
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gctgttggggatgcccttggcggt 179 ||||||||||||||||||| |||| Sbjct: 2681 gctgttggggatgcccttgccggt 2658
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gctgttggggatgcccttggcggt 179 ||||||||||||||||||| |||| Sbjct: 21140649 gctgttggggatgcccttgccggt 21140626
>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 cacagacacacactacacca 78 |||||||||||||||||||| Sbjct: 40251 cacagacacacactacacca 40232 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,027,781 Number of Sequences: 3902068 Number of extensions: 2027781 Number of successful extensions: 42646 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42441 Number of HSP's gapped (non-prelim): 199 length of query: 228 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 206 effective length of database: 17,147,199,772 effective search space: 3532323153032 effective search space used: 3532323153032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)