>ref|XM_866534.1| PREDICTED: Bos taurus hypothetical LOC528207, transcript variant 2
           (LOC528207), mRNA
          Length = 2283

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctacatttcctagtagtaacta 266
           ||||||||||||||||||||||
Sbjct: 611 ctacatttcctagtagtaacta 632

>ref|XM_606619.2| PREDICTED: Bos taurus hypothetical LOC528207, transcript variant 1
           (LOC528207), mRNA
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctacatttcctagtagtaacta 266
           ||||||||||||||||||||||
Sbjct: 611 ctacatttcctagtagtaacta 632

>ref|XM_878569.1| PREDICTED: Bos taurus hypothetical LOC528207, transcript variant 3
           (LOC528207), mRNA
          Length = 2280

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctacatttcctagtagtaacta 266
           ||||||||||||||||||||||
Sbjct: 611 ctacatttcctagtagtaacta 632

>gb|AC126421.12| Mus musculus chromosome 1, clone RP23-167H24, complete sequence
          Length = 218458

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   tgaagggggaggggagggga 317
             ||||||||||||||||||||
Sbjct: 77406 tgaagggggaggggagggga 77387

>gb|AC129200.4| Mus musculus BAC clone RP24-221J22 from chromosome 2, complete sequence
          Length = 168365

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tgaagggggaggggagggga 317
             ||||||||||||||||||||
Sbjct: 94685 tgaagggggaggggagggga 94704

>gb|AC112151.3| Mus musculus BAC clone RP24-86M8 from 2, complete sequence
          Length = 216515

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tgaagggggaggggagggga 317
              ||||||||||||||||||||
Sbjct: 203573 tgaagggggaggggagggga 203554

>ref|XM_794244.1| PREDICTED: Strongylocentrotus purpuratus similar to Zinc finger
            homeobox protein 1b (Smad interacting protein 1)
            (LOC594820), mRNA
          Length = 4092

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  gatctttctctgccaaagag 227
            ||||||||||||||||||||
Sbjct: 2968 gatctttctctgccaaagag 2987

>gb|AE008732.1| Salmonella typhimurium LT2, section 40 of 220 of the complete genome
          Length = 22407

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   gccctggatctttctctgcc 221
             ||||||||||||||||||||
Sbjct: 20869 gccctggatctttctctgcc 20888

>emb|AL023705.1|SPCC736 S.pombe chromosome III cosmid c736
          Length = 44042

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ctgaagggggaggggagggg 316
             ||||||||||||||||||||
Sbjct: 36786 ctgaagggggaggggagggg 36767

>gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8p21-p11, complete
              sequence
          Length = 207519

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tacatacacaaatatttaca 153
              ||||||||||||||||||||
Sbjct: 176081 tacatacacaaatatttaca 176062

>emb|CR749549.1| Homo sapiens mRNA; cDNA DKFZp686B0392 (from clone DKFZp686B0392)
          Length = 4650

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  tacatacacaaatatttaca 153
            ||||||||||||||||||||
Sbjct: 4436 tacatacacaaatatttaca 4455

>gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, complete sequence
          Length = 196856

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tacacaaatatttacatcag 157
              ||||||||||||||||||||
Sbjct: 158595 tacacaaatatttacatcag 158614

>gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, complete sequence
          Length = 170834

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tacacaaatatttacatcag 157
             ||||||||||||||||||||
Sbjct: 42759 tacacaaatatttacatcag 42778

>gb|AC087855.6| Homo sapiens chromosome 8, clone RP11-431M3, complete sequence
          Length = 161256

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tacatacacaaatatttaca 153
              ||||||||||||||||||||
Sbjct: 121491 tacatacacaaatatttaca 121472

>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence
          Length = 207503

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   tacatacacaaatatttaca 153
             ||||||||||||||||||||
Sbjct: 31440 tacatacacaaatatttaca 31459

>dbj|AK143483.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched
            library, clone:E860012J18 product:unclassifiable, full
            insert sequence
          Length = 4247

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  tacctacatacacaaatatt 149
            ||||||||||||||||||||
Sbjct: 1608 tacctacatacacaaatatt 1589

>gb|AC092756.2| Homo sapiens chromosome 15 clone RP11-429D19 map 15q21.3, complete
              sequence
          Length = 189999

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     tactactaccactgtcactc 63
              ||||||||||||||||||||
Sbjct: 188017 tactactaccactgtcactc 188036

>gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map 15q21.3, complete
             sequence
          Length = 157533

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tactactaccactgtcactc 63
             ||||||||||||||||||||
Sbjct: 22748 tactactaccactgtcactc 22767

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 298     tgaagggggaggggagggga 317
               ||||||||||||||||||||
Sbjct: 8192122 tgaagggggaggggagggga 8192103



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     tgaagggggaggggagggga 317
               ||||||||||||||||||||
Sbjct: 6023552 tgaagggggaggggagggga 6023571

>gb|AC126308.6| Homo sapiens 12 BAC RP11-586L15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 85752

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   acatacacaaatatttacat 154
             ||||||||||||||||||||
Sbjct: 74837 acatacacaaatatttacat 74818

>emb|AL935170.11| Mouse DNA sequence from clone RP23-480P16 on chromosome 2, complete
              sequence
          Length = 181154

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tgaagggggaggggagggga 317
              ||||||||||||||||||||
Sbjct: 142062 tgaagggggaggggagggga 142043

>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008C11
          Length = 157205

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tgaagggggaggggagggga 317
             ||||||||||||||||||||
Sbjct: 78722 tgaagggggaggggagggga 78741

>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0003K21
          Length = 158810

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   tgaagggggaggggagggga 317
             ||||||||||||||||||||
Sbjct: 75145 tgaagggggaggggagggga 75126

>gb|AC114920.7| Mus musculus BAC clone RP23-197N18 from 8, complete sequence
          Length = 195042

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tgaagggggaggggagggga 317
             ||||||||||||||||||||
Sbjct: 80722 tgaagggggaggggagggga 80741

>emb|AL929106.5| Mouse DNA sequence from clone RP23-446N16 on chromosome 2, complete
             sequence
          Length = 130872

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tacctacatacacaaatatt 149
             ||||||||||||||||||||
Sbjct: 95435 tacctacatacacaaatatt 95416

>emb|AL772162.4| Mouse DNA sequence from clone RP23-175J8 on chromosome 2, complete
             sequence
          Length = 100090

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   ctgaagggggaggggagggg 316
             ||||||||||||||||||||
Sbjct: 30075 ctgaagggggaggggagggg 30094

>emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chromosome X, complete
              sequence
          Length = 162995

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 134    tacatacacaaatatttacatcag 157
              |||||||| |||||||||||||||
Sbjct: 160137 tacatacataaatatttacatcag 160160


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,211,387
Number of Sequences: 3902068
Number of extensions: 3211387
Number of successful extensions: 135650
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135493
Number of HSP's gapped (non-prelim): 157
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)