ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54f10 |
|---|---|
| Clone Library Name | barley_pub |
>REG2_YEAST (P38232) Protein REG2| Length = 338 Score = 32.3 bits (72), Expect = 0.31 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Frame = +3 Query: 96 CQDGDNLYRTPPFQRPQSCLMRAKITYKRRRSMDYHP---------NKTKEKRRKQWAVS 248 C DNL++ PP + S + A T R M Y P K K KQW ++ Sbjct: 6 CDSLDNLFQDPPEEEESSKFVEAVRTLMNRNDMGYPPAAANGTYCLKKIKSLNAKQWKIN 65 Query: 249 Q 251 + Sbjct: 66 K 66
>KR134_MACFU (Q4W7G8) Keratin-associated protein 13-4| Length = 156 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 27 LHFISCYRVAFVIYNIHISIPRLCQDGDNLYRT--PPFQRPQSCLMRAKITYKRRRSMDY 200 LH+ C Y+ + P +CQ G +LYR P SC K Y+RR SM Sbjct: 19 LHYPGCNP-----YSTALCSPSICQLGSSLYRNCQKTCWEPTSC---RKSCYRRRTSMLC 70 Query: 201 HPNKT 215 P +T Sbjct: 71 SPCQT 75
>KR134_MACFA (Q4W7G9) Keratin-associated protein 13-4| Length = 156 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 27 LHFISCYRVAFVIYNIHISIPRLCQDGDNLYRT--PPFQRPQSCLMRAKITYKRRRSMDY 200 LH+ C Y+ + P +CQ G +LYR P SC K Y+RR SM Sbjct: 19 LHYPGCNP-----YSTALCSPSICQLGSSLYRNCQKTCWEPTSC---RKSCYRRRTSMLC 70 Query: 201 HPNKT 215 P +T Sbjct: 71 SPCQT 75
>KR134_CEBAP (Q4W7G7) Keratin-associated protein 13-4| Length = 156 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 27 LHFISCYRVAFVIYNIHISIPRLCQDGDNLYRT--PPFQRPQSCLMRAKITYKRRRSMDY 200 LH+ C Y+ + P +CQ G +LYR P SC K Y+RR SM Sbjct: 19 LHYPGCNP-----YSTALCSPSICQLGSSLYRNCQKTCWEPTSC---RKSCYRRRTSMLC 70 Query: 201 HPNKT 215 P +T Sbjct: 71 SPCQT 75
>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral| proteinase B) (CANP B) [Contains: Calpain B catalytic subunit 1; Calpain B catalytic subunit 2] Length = 925 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Frame = +2 Query: 86 P*ALPGW-GQPLPYAPFPATP 145 P A+PG G P+PYAP P +P Sbjct: 157 PSAMPGLPGMPMPYAPMPTSP 177
>DXS_RHIME (Q92RJ1) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 645 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 152 AGLGSLERGRTVKVVPILAEPRDRYVYIIYNKCYP 48 AGLG +E T+ + I P DR ++ + ++CYP Sbjct: 56 AGLGVVEL--TIAIHKIFDTPHDRLIFDVGHQCYP 88
>YAO7_SCHPO (Q10086) Putative transcriptional regulatory protein C11D3.07c| Length = 603 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 144 QSCLMRAKITYKRRRSMDYHPNKTKEKRRKQW 239 Q+CLM ++ R++S D P K + +R W Sbjct: 278 QACLMAQQLNLHRKQSTDVEPEKAESWKRIFW 309
>DXS_AGRT5 (Q8UHD7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 639 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 152 AGLGSLERGRTVKVVPILAEPRDRYVYIIYNKCYP 48 AGLG +E T+ + + P DR ++ + ++CYP Sbjct: 51 AGLGVVEL--TIAIHKVFNTPEDRLIFDVGHQCYP 83
>RASF7_HUMAN (Q02833) Ras association domain-containing protein 7 (HRAS1-related| cluster protein 1) Length = 373 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 141 PQSCLMRAKITYKRRRSMDYHPNKTKEKRRKQWAVSQSPSPHLAR 275 P+ CL+RA + K R ++ P KT ++ P+P L+R Sbjct: 103 PERCLIRASLPVKPRAALGCEPRKT---------LTPEPAPSLSR 138
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 177 KRRRSMDYHPNKTKEKRRKQWAVSQSPSPHLARQ*ADNSR 296 +RRR D + + RR+ S+SPSP R+ AD+SR Sbjct: 751 RRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSR 790
>VE2_HPV23 (P50769) Regulatory protein E2| Length = 431 Score = 27.7 bits (60), Expect = 7.7 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 137 ATPILPDASKNNIQKAQIDGLSS*QNQRKTKKTMGRFPVAITPSCT 274 +TP + DAS N + +A LSS Q T + GR A +P+ T Sbjct: 201 STPPVGDASNNAVPEASTTSLSSPQRSPSTNRRYGR--KASSPTAT 244
>CXA3_BOVIN (P41987) Gap junction alpha-3 protein (Connexin-44) (Cx44)| Length = 406 Score = 27.7 bits (60), Expect = 7.7 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Frame = +2 Query: 98 PGWGQPLPYAPFPATPILPDASKNNIQKAQIDGLSS*QNQRKTKKTMGRFPVAITPSC-T 274 PG+ +P P A P TP P N +A+ ++ + + +T P P+ + Sbjct: 285 PGYPEPPPPAALPGTPGTPGGGGNQGLRARAQNWANREAEPQTSSRKASPPAPTPPAAES 344 Query: 275 PIGR*QQA 298 P G QQ+ Sbjct: 345 PGGGPQQS 352
>OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)| Length = 338 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +2 Query: 95 LPGWGQPLPYAPFPATPILPD----ASKNNIQKAQIDG 196 +P P P +P PA P LPD AS + +Q+A G Sbjct: 166 VPSIWSPAPVSPVPAPPSLPDISPPASASCMQRAMSSG 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,134,897 Number of Sequences: 219361 Number of extensions: 1089813 Number of successful extensions: 2887 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2887 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
