ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl54f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I11RA_RAT (Q99MF4) Interleukin-11 receptor alpha chain precursor... 28 7.5
2FGR_HUMAN (P09769) Proto-oncogene tyrosine-protein kinase FGR (E... 28 7.5
3CJ095_HUMAN (Q9H7T3) Protein C10orf95 27 9.8
4TRI14_MOUSE (Q8BVW3) Tripartite motif protein 14 (PU.1-binding p... 27 9.8

>I11RA_RAT (Q99MF4) Interleukin-11 receptor alpha chain precursor|
           (IL-11R-alpha) (IL-11RA)
          Length = 431

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 185 RPTSRPGSFTSPPLGVHDLREDRARRQP--VRVDARDALVAHAYGS 316
           RP   P   T  P+G+ +L  D     P  VRV ARD L A  + +
Sbjct: 261 RPAQHPAWSTVEPIGLEELITDAVAGLPHAVRVSARDFLDAGTWSA 306



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>FGR_HUMAN (P09769) Proto-oncogene tyrosine-protein kinase FGR (EC 2.7.10.2)|
           (P55-FGR) (C-FGR)
          Length = 529

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 278 RLGRADAERGLLADHEPQGA 219
           ++GR DAER LL+   PQGA
Sbjct: 148 KIGRKDAERQLLSPGNPQGA 167



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>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 185 RPTSRPGSFTSPPLGVHDLREDRARRQPVRVDARDALVAHAYGSCRG 325
           RPT RP +  +PP    D R  R RR P R   R         SC G
Sbjct: 125 RPTPRPCAGPAPPPASRDCRCRRPRRWP-RAGRRGRRAGACKPSCAG 170



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>TRI14_MOUSE (Q8BVW3) Tripartite motif protein 14 (PU.1-binding protein)|
          Length = 440

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 323 HDNFHKHGRPKRREHRLG-RADAERGLLADHEPQGAV 216
           HD      RP+R  HRLG   D E G+LA ++  G +
Sbjct: 373 HDGQRSRLRPRRDPHRLGVFLDYEAGILAFYDVAGGM 409


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,128,446
Number of Sequences: 219361
Number of extensions: 697430
Number of successful extensions: 1525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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