ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl54f06 |
|---|---|
| Clone Library Name | barley_pub |
>VG48_SHV21 (Q01033) Hypothetical gene 48 protein| Length = 797 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQE 188 +E+D+GE ED + E EGED+G G++ Sbjct: 416 EEEDEGEDEEDEKDEKEEGEDEGDDGED 443 Score = 30.8 bits (68), Expect = 0.94 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQVGQE 188 +D+G+ ++GE E EGED+G G++ Sbjct: 658 EDEGDEGDEGEDEGDEGEDEGDEGED 683 Score = 30.8 bits (68), Expect = 0.94 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQVGQE 188 +D+G+ ++GE E EGED+G G++ Sbjct: 606 EDEGDEGDEGEDEGDEGEDEGDEGED 631 Score = 30.8 bits (68), Expect = 0.94 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -2 Query: 268 EQDQGEHREDGEAEHREGEDQGQVGQEHQG 179 E+D+ + +E+GE E +GED+G+ E +G Sbjct: 424 EEDEKDEKEEGEDEGDDGEDEGEDEGEDEG 453 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -2 Query: 268 EQDQGEHRED-GEAEHREGEDQGQVGQE 188 E D+GE D GE E EGED+G G E Sbjct: 663 EGDEGEDEGDEGEDEGDEGEDEGDEGDE 690 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -2 Query: 268 EQDQGEHRED-GEAEHREGEDQGQVGQE 188 E D+GE D GE E EGED+G G E Sbjct: 639 EGDEGEDEGDEGEDEGDEGEDEGDEGDE 666 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 268 EQDQGEHREDGEAEHREGEDQGQVGQE 188 E D+G+ ED E EGED+G G E Sbjct: 479 EGDEGDEGEDEGDEGDEGEDEGDEGDE 505 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -2 Query: 268 EQDQGEHRED-GEAEHREGEDQGQVGQE 188 E D+GE D GE E EGED+G G++ Sbjct: 625 EGDEGEDEGDEGEDEGDEGEDEGDEGED 652 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -2 Query: 268 EQDQGEHRED-GEAEHREGEDQGQVGQE 188 E D+GE D GE E EGED+G G++ Sbjct: 611 EGDEGEDEGDEGEDEGDEGEDEGDEGED 638 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQVGQE 188 +D+G+ ED E EGED+G G++ Sbjct: 651 EDEGDEGEDEGDEGDEGEDEGDEGED 676
>RGP1_HUMAN (P46060) Ran GTPase-activating protein 1| Length = 587 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGED-QGQVGQEHQGRVRPRKCSQGARSQALRRLV*NPR*GE 98 +E+++GE E+ EAE E ED + + +E + P++ QG +S R + +P GE Sbjct: 364 EEEEEGEEEEE-EAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTGE 421
>SPR2_CAEEL (Q18240) Suppressor of presenilin 2| Length = 312 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVG 194 +E+D GE EDG E EGE++ + G Sbjct: 263 EEEDMGEEEEDGVEEEAEGEEEEEDG 288
>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 105 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 9/50 (18%) Frame = -2 Query: 274 LQEQDQGEHREDGEAEHREGEDQGQ---------VGQEHQGRVRPRKCSQ 152 ++ +G H+ G+ RE + QGQ G+ H+G R R+CS+ Sbjct: 6 MRSPSEGPHQGPGQDHEREEQGQGQELSPERVEDYGRTHRGHHRHRRCSR 55
>ACRBP_CAVPO (Q60485) Acrosin-binding protein precursor (Proacrosin-binding| protein sp32) Length = 543 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQEHQ 182 QEQ Q +H++D EH++ + Q Q QE + Sbjct: 197 QEQGQEQHKQDPTQEHKQDDGQEQEEQEEE 226
>CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 599 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQVGQEHQGRV 173 +++ E E+GE E EGE++G+ E +G V Sbjct: 426 EEEEEEEEEGEEEGGEGEEEGEEEVEEEGEV 456 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQE 188 +E+++GE E+ E E EGE++G G+E Sbjct: 418 EEEEEGEGEEE-EEEEEEGEEEGGEGEE 444
>ATS8_HUMAN (Q9UP79) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 8) (ADAM-TS 8) (ADAM-TS8) (METH-2) (METH-8) Length = 890 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQG 203 Q Q++G+H+ED E E +E E +G Sbjct: 176 QRQERGDHQEDSEEESQEEEAEG 198
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor| Length = 678 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -2 Query: 271 QEQDQGEHREDG--EAEHREGEDQGQVGQEHQGRVRPRKCSQ 152 +E +GEH+E+ E EH+EGE + + +E + + K + Sbjct: 372 EEHKEGEHKEEEHKEGEHKEGEHKEEEHKEEEHKKEEHKSKE 413
>IE68_SHV21 (Q01042) Immediate-early protein| Length = 407 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGED--QGQVGQEHQGR 176 +EQ + E E+GE R GE+ +G+ G+E +GR Sbjct: 60 EEQRREEVEEEGEERERRGEEEREGEGGEEGEGR 93
>HAP1_RAT (P54256) Huntingtin-associated protein 1 (HAP-1)| Length = 629 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGE-DQGQVGQEHQGRVRP 167 +E ++ E E+GE E REG+ DQ Q G +P Sbjct: 220 EEDEEDEEEEEGEEEEREGQRDQDQQHDHPYGAPKP 255
>IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B (eIF-5B)| (Translation initiation factor IF-2) Length = 1002 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQV 197 ++Q+QGE E+GE E E E++ V Sbjct: 351 EDQNQGEEEEEGEEEEEEEEERAHV 375
>PDXH_CAEEL (Q20939) Putative pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)| (PNP/PMP oxidase) (PNPOx) Length = 253 Score = 28.9 bits (63), Expect = 3.6 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 21 YHIIPKYVHIWSAQSNQHH 77 YH+IP+Y W QS++ H Sbjct: 216 YHLIPRYFEFWQGQSDRLH 234
>CRU1_BRANA (P33523) Cruciferin BnC1 precursor (11S globulin) (12S storage| protein) [Contains: Cruciferin BnC1 alpha subunit; Cruciferin BnC1 beta subunit] Length = 490 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQ--VGQEHQGRVRPRKCSQGARSQ 137 QD + G + EG+ QGQ GQ HQG+ + ++ QG + Q Sbjct: 111 QDSSVFQPSGGSPSGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQ 155
>SWI6_KLULA (P40418) Regulatory protein SWI6 (Cell-cycle box factor, chain| SWI6) (Trans-acting activator of HO endonuclease gene) (MBF subunit P90) Length = 769 Score = 28.5 bits (62), Expect = 4.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 253 EHREDGEAEHREGEDQGQVGQEHQGR 176 +H +D EA H ED GQ E+ GR Sbjct: 99 DHDDDNEANHNGVEDDGQKTPENNGR 124
>CRUA_BRANA (P11090) Cruciferin precursor (11S globulin) (12S storage protein)| [Contains: Cruciferin alpha subunit; Cruciferin beta subunit] Length = 488 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQ--VGQEHQGRVRPRKCSQGARSQ 137 QD + G + EG+ QGQ GQ HQG+ + ++ QG + Q Sbjct: 110 QDSSVFQPSGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQ 154
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQEHQGRVRPRK 161 QE+ QG+ E+ E + E E+Q + QE +G R+ Sbjct: 166 QEKHQGKESEEEEEDQDEDEEQDKESQESEGSESQRE 202
>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus| (Acinus) Length = 1341 Score = 28.5 bits (62), Expect = 4.7 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQE 188 +E+++ E E+ + E EG+D+GQ +E Sbjct: 270 EEEEEEEEEEEEDDEEEEGDDEGQKSRE 297
>FMRA_CALPA (Q01133) Antho-RFamide neuropeptides precursor [Contains:| Antho-RFamide] Length = 334 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -2 Query: 271 QEQDQGEH-REDGEAEHREGEDQGQVG-QEHQGRVRPRKCSQG 149 +E++QG RE+ + EDQG+ G +E QGR R QG Sbjct: 193 REEEQGRFGREEDQGRFGREEDQGRFGREEEQGRFGKRDEDQG 235
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQEHQGRVRPRKCSQGARSQ 137 + Q + E + DGE R +D Q Q+ + R+RP C Q R Q Sbjct: 66 ETQLKEEQQRDGEDPQRRYQDCRQHCQQEERRLRPH-CEQSCREQ 109
>CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 606 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQE 188 +E+++GE E+ E E EGE++G G+E Sbjct: 418 EEEEEGEGEEE-EEEEEEGEEEGGEGEE 444
>CSTN2_HUMAN (Q9H4D0) Calsyntenin-2 precursor| Length = 955 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = -2 Query: 271 QEQDQGEHREDGEAE--HREGEDQGQVGQEHQGRVRPRKCSQGARSQAL 131 +++ +GE E+ E E G D + +E +G R R GAR L Sbjct: 898 EDETEGEEEEEAEEEMSSSSGSDDSEEEEEEEGMGRGRHGQNGARQAQL 946
>RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome receptor protein)| (mRRp) Length = 1605 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -2 Query: 265 QDQGEHREDGEAEHREGEDQGQVGQEHQGRVRPRKCSQGARSQA 134 Q+Q + E G+ + ++GE G++ +G K +GA++QA Sbjct: 255 QNQAKKGEGGQNQAKKGEGAQNQGKKGEGAQNQGKKGEGAQNQA 298
>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light| polypeptide) (NF-L) Length = 543 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = -2 Query: 271 QEQDQGEHREDGEAEHREGEDQGQVGQEHQG 179 +E ++GE ++ EAE G+++ + G+E +G Sbjct: 482 EEGEEGEEAKEEEAEEEGGQEKEEEGEEGEG 512
>ACRBP_HUMAN (Q8NEB7) Acrosin-binding protein precursor (Proacrosin-binding| protein sp32) (Cancer testis antigen OY-TES-1) Length = 543 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -2 Query: 268 EQDQG-EHREDGEAEHREGEDQGQVGQEHQ 182 +Q+QG EHR++ EH++ E Q Q QE + Sbjct: 196 KQEQGVEHRQEPTQEHKQEEGQKQEEQEEE 225
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = -2 Query: 268 EQDQGEHREDGEAEHREGEDQGQVGQEHQGRVRPRK 161 E+D G EDG E G D G V + R+ Sbjct: 22 ERDSGSDGEDGVTEQHSGSDTGSVDHHSENETSDRE 57
>BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein) (Neuronal| axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein) Length = 226 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Frame = -2 Query: 268 EQDQGEHRED----GEAEHREGEDQGQVGQEHQGRVRPRKCSQGARSQA 134 E +G+ + D G+AE +EGE +E + P K A ++A Sbjct: 49 EAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKA 97
>NP1L4_HUMAN (Q99733) Nucleosome assembly protein 1-like 4 (Nucleosome assembly| protein 2) (NAP2) Length = 375 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -2 Query: 274 LQEQDQGEHREDGEAEHREGEDQGQVGQEHQGRVRPR 164 +++ D E E+GE E EG+++G+ E + P+ Sbjct: 340 IEDDDNFEEGEEGEEEELEGDEEGE--DEDDAEINPK 374
>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4) (Histone acetyltransferase MOZ2) (Monocytic leukemia zinc finger protein-related factor) (Histone acetyltransferas Length = 2073 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 244 EDGEAEHREGEDQGQVGQEHQGRVRPRKCSQGARSQ 137 E+ E E E E++ + G+E +G K GA+SQ Sbjct: 1353 EEEEEEEEEEEEEEEEGEEEEGGGNVEKDPDGAKSQ 1388
>NCKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1099 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = -2 Query: 265 QDQGE-HREDGEAEHREGEDQGQ-VGQEHQGRVR 170 +D+GE H EDGE + EGE + Q + E+ G + Sbjct: 809 EDEGEIHAEDGEMKGNEGETESQELSAENHGEAK 842 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,920,896 Number of Sequences: 219361 Number of extensions: 513308 Number of successful extensions: 1943 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1910 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
